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NARF (nuclear prelamin A recognition factor)

Identity

Alias_symbol (synonym)FLJ10067
DKFZp434G0420
IOP2
Other alias
HGNC (Hugo) NARF
LocusID (NCBI) 26502
Atlas_Id 70693
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80416060 and ends at 80446143 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FOXK2 (17q25.3) / NARF (17q25.3)ITGB4 (17q25.1) / NARF (17q25.3)SEPT9 (17q25.2) / NARF (17q25.3)
ITGB4 NARFSEPT9 NARFFOXK2 NARF

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NARF   29916
Cards
Entrez_Gene (NCBI)NARF  26502  nuclear prelamin A recognition factor
AliasesIOP2
GeneCards (Weizmann)NARF
Ensembl hg19 (Hinxton)ENSG00000141562 [Gene_View]  chr17:80416060-80446143 [Contig_View]  NARF [Vega]
Ensembl hg38 (Hinxton)ENSG00000141562 [Gene_View]  chr17:80416060-80446143 [Contig_View]  NARF [Vega]
ICGC DataPortalENSG00000141562
TCGA cBioPortalNARF
AceView (NCBI)NARF
Genatlas (Paris)NARF
WikiGenes26502
SOURCE (Princeton)NARF
Genetics Home Reference (NIH)NARF
Genomic and cartography
GoldenPath hg19 (UCSC)NARF  -     chr17:80416060-80446143 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NARF  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblNARF - 17q25.3 [CytoView hg19]  NARF - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBINARF [Mapview hg19]  NARF [Mapview hg38]
OMIM605349   
Gene and transcription
Genbank (Entrez)AA568571 AF128406 AK000929 AK056966 AK093717
RefSeq transcript (Entrez)NM_001038618 NM_001083608 NM_012336 NM_031968
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010663 NW_004929408
Consensus coding sequences : CCDS (NCBI)NARF
Cluster EST : UnigeneHs.600304 [ NCBI ]
CGAP (NCI)Hs.600304
Alternative Splicing GalleryENSG00000141562
Gene ExpressionNARF [ NCBI-GEO ]   NARF [ EBI - ARRAY_EXPRESS ]   NARF [ SEEK ]   NARF [ MEM ]
Gene Expression Viewer (FireBrowse)NARF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26502
GTEX Portal (Tissue expression)NARF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHQ1
Splice isoforms : SwissVarQ9UHQ1
PhosPhoSitePlusQ9UHQ1
Domains : Interpro (EBI)Fe_hydrogenase    Fe_hydrogenase_lsu_C    Fe_hydrogenase_ssu-like   
Domain families : Pfam (Sanger)Fe_hyd_lg_C (PF02906)    Fe_hyd_SSU (PF02256)   
Domain families : Pfam (NCBI)pfam02906    pfam02256   
Domain families : Smart (EMBL)Fe_hyd_SSU (SM00902)  
Conserved Domain (NCBI)NARF
DMDM Disease mutations26502
Blocks (Seattle)NARF
SuperfamilyQ9UHQ1
Human Protein AtlasENSG00000141562
Peptide AtlasQ9UHQ1
HPRD05637
IPIIPI00185459   IPI00744719   IPI00902741   IPI00908760   IPI00908851   IPI00011237   IPI00185056   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHQ1
IntAct (EBI)Q9UHQ1
FunCoupENSG00000141562
BioGRIDNARF
STRING (EMBL)NARF
ZODIACNARF
Ontologies - Pathways
QuickGOQ9UHQ1
Ontology : AmiGONADH dehydrogenase activity  lamin binding  nucleus  lamin filament  nuclear lamina  nucleolus  cytosol  iron-sulfur cluster assembly  nuclear lumen  iron-sulfur cluster binding  
Ontology : EGO-EBINADH dehydrogenase activity  lamin binding  nucleus  lamin filament  nuclear lamina  nucleolus  cytosol  iron-sulfur cluster assembly  nuclear lumen  iron-sulfur cluster binding  
NDEx NetworkNARF
Atlas of Cancer Signalling NetworkNARF
Wikipedia pathwaysNARF
Orthology - Evolution
OrthoDB26502
GeneTree (enSembl)ENSG00000141562
Phylogenetic Trees/Animal Genes : TreeFamNARF
HOVERGENQ9UHQ1
HOGENOMQ9UHQ1
Homologs : HomoloGeneNARF
Homology/Alignments : Family Browser (UCSC)NARF
Gene fusions - Rearrangements
Fusion: TCGAITGB4 NARF
Fusion: TCGASEPT9 NARF
Fusion: TCGAFOXK2 NARF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNARF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NARF
dbVarNARF
ClinVarNARF
1000_GenomesNARF 
Exome Variant ServerNARF
ExAC (Exome Aggregation Consortium)NARF (select the gene name)
Genetic variants : HAPMAP26502
Genomic Variants (DGV)NARF [DGVbeta]
DECIPHER (Syndromes)17:80416060-80446143  ENSG00000141562
CONAN: Copy Number AnalysisNARF 
Mutations
ICGC Data PortalNARF 
TCGA Data PortalNARF 
Broad Tumor PortalNARF
OASIS PortalNARF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNARF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNARF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NARF
DgiDB (Drug Gene Interaction Database)NARF
DoCM (Curated mutations)NARF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NARF (select a term)
intoGenNARF
Cancer3DNARF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605349   
Orphanet
MedgenNARF
Genetic Testing Registry NARF
NextProtQ9UHQ1 [Medical]
TSGene26502
GENETestsNARF
Huge Navigator NARF [HugePedia]
snp3D : Map Gene to Disease26502
BioCentury BCIQNARF
ClinGenNARF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26502
Chemical/Pharm GKB GenePA142671294
Clinical trialNARF
Miscellaneous
canSAR (ICR)NARF (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNARF
EVEXNARF
GoPubMedNARF
iHOPNARF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:31 CET 2017

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