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NARFL (nuclear prelamin A recognition factor like)

Identity

Alias_namesnuclear prelamin A recognition factor-like
Alias_symbol (synonym)FLJ21988
PRN
HPRN
IOP1
NAR1
Other aliasLET1L
HGNC (Hugo) NARFL
LocusID (NCBI) 64428
Atlas_Id 70694
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 729755 and ends at 741038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NARFL (16p13.3) / RBBP6 (16p12.1)SPTAN1 (9q34.11) / NARFL (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NARFL   14179
Cards
Entrez_Gene (NCBI)NARFL  64428  nuclear prelamin A recognition factor like
AliasesHPRN; IOP1; LET1L; NAR1; 
PRN
GeneCards (Weizmann)NARFL
Ensembl hg19 (Hinxton)ENSG00000103245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103245 [Gene_View]  chr16:729755-741038 [Contig_View]  NARFL [Vega]
ICGC DataPortalENSG00000103245
TCGA cBioPortalNARFL
AceView (NCBI)NARFL
Genatlas (Paris)NARFL
WikiGenes64428
SOURCE (Princeton)NARFL
Genetics Home Reference (NIH)NARFL
Genomic and cartography
GoldenPath hg38 (UCSC)NARFL  -     chr16:729755-741038 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NARFL  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblNARFL - 16p13.3 [CytoView hg19]  NARFL - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINARFL [Mapview hg19]  NARFL [Mapview hg38]
OMIM611118   
Gene and transcription
Genbank (Entrez)AK025641 AK025861 AK056467 AK094812 AK095675
RefSeq transcript (Entrez)NM_001304799 NM_022493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NARFL
Cluster EST : UnigeneHs.513247 [ NCBI ]
CGAP (NCI)Hs.513247
Alternative Splicing GalleryENSG00000103245
Gene ExpressionNARFL [ NCBI-GEO ]   NARFL [ EBI - ARRAY_EXPRESS ]   NARFL [ SEEK ]   NARFL [ MEM ]
Gene Expression Viewer (FireBrowse)NARFL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64428
GTEX Portal (Tissue expression)NARFL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6Q4
Splice isoforms : SwissVarQ9H6Q4
PhosPhoSitePlusQ9H6Q4
Domains : Interpro (EBI)Fe_hydrogenase    Fe_hydrogenase_lsu_C    Fe_hydrogenase_ssu   
Domain families : Pfam (Sanger)Fe_hyd_lg_C (PF02906)    Fe_hyd_SSU (PF02256)   
Domain families : Pfam (NCBI)pfam02906    pfam02256   
Domain families : Smart (EMBL)Fe_hyd_SSU (SM00902)  
Conserved Domain (NCBI)NARFL
DMDM Disease mutations64428
Blocks (Seattle)NARFL
SuperfamilyQ9H6Q4
Human Protein AtlasENSG00000103245
Peptide AtlasQ9H6Q4
HPRD14810
IPIIPI00008348   IPI00847883   IPI00645749   IPI00909439   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6Q4
IntAct (EBI)Q9H6Q4
FunCoupENSG00000103245
BioGRIDNARFL
STRING (EMBL)NARFL
ZODIACNARFL
Ontologies - Pathways
QuickGOQ9H6Q4
Ontology : AmiGOresponse to hypoxia  hematopoietic progenitor cell differentiation  regulation of gene expression  iron-sulfur cluster assembly  oxygen homeostasis  metal ion binding  4 iron, 4 sulfur cluster binding  CIA complex  
Ontology : EGO-EBIresponse to hypoxia  hematopoietic progenitor cell differentiation  regulation of gene expression  iron-sulfur cluster assembly  oxygen homeostasis  metal ion binding  4 iron, 4 sulfur cluster binding  CIA complex  
NDEx NetworkNARFL
Atlas of Cancer Signalling NetworkNARFL
Wikipedia pathwaysNARFL
Orthology - Evolution
OrthoDB64428
GeneTree (enSembl)ENSG00000103245
Phylogenetic Trees/Animal Genes : TreeFamNARFL
HOVERGENQ9H6Q4
HOGENOMQ9H6Q4
Homologs : HomoloGeneNARFL
Homology/Alignments : Family Browser (UCSC)NARFL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNARFL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NARFL
dbVarNARFL
ClinVarNARFL
1000_GenomesNARFL 
Exome Variant ServerNARFL
ExAC (Exome Aggregation Consortium)NARFL (select the gene name)
Genetic variants : HAPMAP64428
Genomic Variants (DGV)NARFL [DGVbeta]
DECIPHERNARFL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNARFL 
Mutations
ICGC Data PortalNARFL 
TCGA Data PortalNARFL 
Broad Tumor PortalNARFL
OASIS PortalNARFL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNARFL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNARFL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NARFL
DgiDB (Drug Gene Interaction Database)NARFL
DoCM (Curated mutations)NARFL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NARFL (select a term)
intoGenNARFL
Cancer3DNARFL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611118   
Orphanet
MedgenNARFL
Genetic Testing Registry NARFL
NextProtQ9H6Q4 [Medical]
TSGene64428
GENETestsNARFL
Target ValidationNARFL
Huge Navigator NARFL [HugePedia]
snp3D : Map Gene to Disease64428
BioCentury BCIQNARFL
ClinGenNARFL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64428
Chemical/Pharm GKB GenePA128394707
Clinical trialNARFL
Miscellaneous
canSAR (ICR)NARFL (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNARFL
EVEXNARFL
GoPubMedNARFL
iHOPNARFL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:44 CEST 2017

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