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NAT10 (N-acetyltransferase 10)

Identity

Alias_namesN-acetyltransferase 10
N-acetyltransferase 10 (GCN5-related)
Alias_symbol (synonym)hALP
FLJ10774
FLJ12179
NET43
KIAA1709
Other aliasALP
HGNC (Hugo) NAT10
LocusID (NCBI) 55226
Atlas_Id 55305
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 34105564 and ends at 34146911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CCPG1 (15q21.3) / NAT10 (11p13)NAT10 (11p13) / CAPRIN1 (11p13)NAT10 11p13 / CAPRIN1 11p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NAT10   29830
Cards
Entrez_Gene (NCBI)NAT10  55226  N-acetyltransferase 10
AliasesALP; NET43
GeneCards (Weizmann)NAT10
Ensembl hg19 (Hinxton)ENSG00000135372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135372 [Gene_View]  chr11:34105564-34146911 [Contig_View]  NAT10 [Vega]
ICGC DataPortalENSG00000135372
TCGA cBioPortalNAT10
AceView (NCBI)NAT10
Genatlas (Paris)NAT10
WikiGenes55226
SOURCE (Princeton)NAT10
Genetics Home Reference (NIH)NAT10
Genomic and cartography
GoldenPath hg38 (UCSC)NAT10  -     chr11:34105564-34146911 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAT10  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblNAT10 - 11p13 [CytoView hg19]  NAT10 - 11p13 [CytoView hg38]
Mapping of homologs : NCBINAT10 [Mapview hg19]  NAT10 [Mapview hg38]
OMIM609221   
Gene and transcription
Genbank (Entrez)AB051496 AF489535 AK001636 AK022241 AK074430
RefSeq transcript (Entrez)NM_001144030 NM_024662
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAT10
Cluster EST : UnigeneHs.577281 [ NCBI ]
CGAP (NCI)Hs.577281
Alternative Splicing GalleryENSG00000135372
Gene ExpressionNAT10 [ NCBI-GEO ]   NAT10 [ EBI - ARRAY_EXPRESS ]   NAT10 [ SEEK ]   NAT10 [ MEM ]
Gene Expression Viewer (FireBrowse)NAT10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55226
GTEX Portal (Tissue expression)NAT10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0A0
Splice isoforms : SwissVarQ9H0A0
PhosPhoSitePlusQ9H0A0
Domaine pattern : Prosite (Expaxy)GNAT (PS51186)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_dom    Helicase_dom    NAT10    TmcA/NAT10/Kre33    TmcA_N    tRNA_bind_dom   
Domain families : Pfam (Sanger)DUF1726 (PF08351)    GNAT_acetyltr_2 (PF13718)    Helicase_RecD (PF05127)    tRNA_bind_2 (PF13725)   
Domain families : Pfam (NCBI)pfam08351    pfam13718    pfam05127    pfam13725   
Conserved Domain (NCBI)NAT10
DMDM Disease mutations55226
Blocks (Seattle)NAT10
SuperfamilyQ9H0A0
Human Protein AtlasENSG00000135372
Peptide AtlasQ9H0A0
HPRD10964
IPIIPI00300127   IPI00921516   IPI00982584   IPI00980781   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0A0
IntAct (EBI)Q9H0A0
FunCoupENSG00000135372
BioGRIDNAT10
STRING (EMBL)NAT10
ZODIACNAT10
Ontologies - Pathways
QuickGOQ9H0A0
Ontology : AmiGOtRNA binding  rRNA modification  nuclear chromosome, telomeric region  tRNA wobble cytosine modification  RNA binding  protein binding  ATP binding  nucleus  nucleoplasm  telomerase holoenzyme complex  nucleolus  N-acetyltransferase activity  biological_process  membrane  midbody  90S preribosome  negative regulation of telomere maintenance via telomerase  tRNA acetylation  tRNA N-acetyltransferase activity  DNA polymerase binding  rRNA acetylation involved in maturation of SSU-rRNA  rRNA cytidine N-acetyltransferase activity  
Ontology : EGO-EBItRNA binding  rRNA modification  nuclear chromosome, telomeric region  tRNA wobble cytosine modification  RNA binding  protein binding  ATP binding  nucleus  nucleoplasm  telomerase holoenzyme complex  nucleolus  N-acetyltransferase activity  biological_process  membrane  midbody  90S preribosome  negative regulation of telomere maintenance via telomerase  tRNA acetylation  tRNA N-acetyltransferase activity  DNA polymerase binding  rRNA acetylation involved in maturation of SSU-rRNA  rRNA cytidine N-acetyltransferase activity  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNAT10
Atlas of Cancer Signalling NetworkNAT10
Wikipedia pathwaysNAT10
Orthology - Evolution
OrthoDB55226
GeneTree (enSembl)ENSG00000135372
Phylogenetic Trees/Animal Genes : TreeFamNAT10
HOVERGENQ9H0A0
HOGENOMQ9H0A0
Homologs : HomoloGeneNAT10
Homology/Alignments : Family Browser (UCSC)NAT10
Gene fusions - Rearrangements
Fusion: TCGANAT10 11p13 CAPRIN1 11p13 BRCA OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAT10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAT10
dbVarNAT10
ClinVarNAT10
1000_GenomesNAT10 
Exome Variant ServerNAT10
ExAC (Exome Aggregation Consortium)NAT10 (select the gene name)
Genetic variants : HAPMAP55226
Genomic Variants (DGV)NAT10 [DGVbeta]
DECIPHERNAT10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAT10 
Mutations
ICGC Data PortalNAT10 
TCGA Data PortalNAT10 
Broad Tumor PortalNAT10
OASIS PortalNAT10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAT10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAT10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAT10
DgiDB (Drug Gene Interaction Database)NAT10
DoCM (Curated mutations)NAT10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAT10 (select a term)
intoGenNAT10
Cancer3DNAT10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609221   
Orphanet
MedgenNAT10
Genetic Testing Registry NAT10
NextProtQ9H0A0 [Medical]
TSGene55226
GENETestsNAT10
Huge Navigator NAT10 [HugePedia]
snp3D : Map Gene to Disease55226
BioCentury BCIQNAT10
ClinGenNAT10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55226
Chemical/Pharm GKB GenePA143485555
Clinical trialNAT10
Miscellaneous
canSAR (ICR)NAT10 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAT10
EVEXNAT10
GoPubMedNAT10
iHOPNAT10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:27:58 CEST 2017
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