Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NAT8B (N-acetyltransferase 8B (putative, gene/pseudogene))

Identity

Alias_namesN-acetyltransferase 8B (gene/pseudogene)
N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)
Alias_symbol (synonym)Hcml2
NAT8BP
Other aliasCML2
HGNC (Hugo) NAT8B
LocusID (NCBI) 51471
Atlas_Id 70701
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 73700509 and ends at 73701340 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAT8B   30235
Cards
Entrez_Gene (NCBI)NAT8B  51471  N-acetyltransferase 8B (putative, gene/pseudogene)
AliasesCML2; Hcml2; NAT8BP
GeneCards (Weizmann)NAT8B
Ensembl hg19 (Hinxton)ENSG00000204872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204872 [Gene_View]  chr2:73700509-73701340 [Contig_View]  NAT8B [Vega]
ICGC DataPortalENSG00000204872
TCGA cBioPortalNAT8B
AceView (NCBI)NAT8B
Genatlas (Paris)NAT8B
WikiGenes51471
SOURCE (Princeton)NAT8B
Genetics Home Reference (NIH)NAT8B
Genomic and cartography
GoldenPath hg38 (UCSC)NAT8B  -     chr2:73700509-73701340 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAT8B  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblNAT8B - 2p13.1 [CytoView hg19]  NAT8B - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBINAT8B [Mapview hg19]  NAT8B [Mapview hg38]
OMIM608190   
Gene and transcription
Genbank (Entrez)AF185571 BC069564 BC121101 BC121102 BC160071
RefSeq transcript (Entrez)NM_016347
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAT8B
Cluster EST : UnigeneHs.278983 [ NCBI ]
CGAP (NCI)Hs.278983
Alternative Splicing GalleryENSG00000204872
Gene ExpressionNAT8B [ NCBI-GEO ]   NAT8B [ EBI - ARRAY_EXPRESS ]   NAT8B [ SEEK ]   NAT8B [ MEM ]
Gene Expression Viewer (FireBrowse)NAT8B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51471
GTEX Portal (Tissue expression)NAT8B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHF3
Splice isoforms : SwissVarQ9UHF3
Catalytic activity : Enzyme2.3.1.- [ Enzyme-Expasy ]   2.3.1.-2.3.1.- [ IntEnz-EBI ]   2.3.1.- [ BRENDA ]   2.3.1.- [ KEGG ]   
PhosPhoSitePlusQ9UHF3
Domaine pattern : Prosite (Expaxy)GNAT (PS51186)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_dom   
Domain families : Pfam (Sanger)Acetyltransf_1 (PF00583)   
Domain families : Pfam (NCBI)pfam00583   
Conserved Domain (NCBI)NAT8B
DMDM Disease mutations51471
Blocks (Seattle)NAT8B
SuperfamilyQ9UHF3
Human Protein AtlasENSG00000204872
Peptide AtlasQ9UHF3
HPRD12188
IPIIPI00008889   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHF3
IntAct (EBI)Q9UHF3
FunCoupENSG00000204872
BioGRIDNAT8B
STRING (EMBL)NAT8B
ZODIACNAT8B
Ontologies - Pathways
QuickGOQ9UHF3
Ontology : AmiGOgastrulation with mouth forming second  lysine N-acetyltransferase activity, acting on acetyl phosphate as donor  lysine N-acetyltransferase activity, acting on acetyl phosphate as donor  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  N-acetyltransferase activity  positive regulation of gene expression  integral component of membrane  peptidyl-lysine N6-acetylation  endoplasmic reticulum-Golgi intermediate compartment membrane  negative regulation of apoptotic process  cellular protein metabolic process  beta-amyloid metabolic process  
Ontology : EGO-EBIgastrulation with mouth forming second  lysine N-acetyltransferase activity, acting on acetyl phosphate as donor  lysine N-acetyltransferase activity, acting on acetyl phosphate as donor  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  N-acetyltransferase activity  positive regulation of gene expression  integral component of membrane  peptidyl-lysine N6-acetylation  endoplasmic reticulum-Golgi intermediate compartment membrane  negative regulation of apoptotic process  cellular protein metabolic process  beta-amyloid metabolic process  
NDEx NetworkNAT8B
Atlas of Cancer Signalling NetworkNAT8B
Wikipedia pathwaysNAT8B
Orthology - Evolution
OrthoDB51471
GeneTree (enSembl)ENSG00000204872
Phylogenetic Trees/Animal Genes : TreeFamNAT8B
HOVERGENQ9UHF3
HOGENOMQ9UHF3
Homologs : HomoloGeneNAT8B
Homology/Alignments : Family Browser (UCSC)NAT8B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAT8B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAT8B
dbVarNAT8B
ClinVarNAT8B
1000_GenomesNAT8B 
Exome Variant ServerNAT8B
ExAC (Exome Aggregation Consortium)NAT8B (select the gene name)
Genetic variants : HAPMAP51471
Genomic Variants (DGV)NAT8B [DGVbeta]
DECIPHERNAT8B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAT8B 
Mutations
ICGC Data PortalNAT8B 
TCGA Data PortalNAT8B 
Broad Tumor PortalNAT8B
OASIS PortalNAT8B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNAT8B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAT8B
DgiDB (Drug Gene Interaction Database)NAT8B
DoCM (Curated mutations)NAT8B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAT8B (select a term)
intoGenNAT8B
Cancer3DNAT8B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608190   
Orphanet
MedgenNAT8B
Genetic Testing Registry NAT8B
NextProtQ9UHF3 [Medical]
TSGene51471
GENETestsNAT8B
Target ValidationNAT8B
Huge Navigator NAT8B [HugePedia]
snp3D : Map Gene to Disease51471
BioCentury BCIQNAT8B
ClinGenNAT8B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51471
Chemical/Pharm GKB GenePA162396978
Clinical trialNAT8B
Miscellaneous
canSAR (ICR)NAT8B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAT8B
EVEXNAT8B
GoPubMedNAT8B
iHOPNAT8B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:32:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.