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NATD1 (N-acetyltransferase domain containing 1)

Identity

Alias_namesC17orf103
chromosome 17 open reading frame 103
Alias_symbol (synonym)MGC33894
Gtlf3b
Other alias
HGNC (Hugo) NATD1
LocusID (NCBI) 256302
Atlas_Id 70703
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21238871 and ends at 21253266 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FKBP8 (19p13.11) / NATD1 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NATD1   30770
Cards
Entrez_Gene (NCBI)NATD1  256302  N-acetyltransferase domain containing 1
AliasesC17orf103; Gtlf3b
GeneCards (Weizmann)NATD1
Ensembl hg19 (Hinxton)ENSG00000274180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274180 [Gene_View]  chr17:21238871-21253266 [Contig_View]  NATD1 [Vega]
ICGC DataPortalENSG00000274180
TCGA cBioPortalNATD1
AceView (NCBI)NATD1
Genatlas (Paris)NATD1
WikiGenes256302
SOURCE (Princeton)NATD1
Genetics Home Reference (NIH)NATD1
Genomic and cartography
GoldenPath hg38 (UCSC)NATD1  -     chr17:21238871-21253266 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NATD1  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblNATD1 - 17p11.2 [CytoView hg19]  NATD1 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBINATD1 [Mapview hg19]  NATD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126856 BC029527 BC044645 CR749731
RefSeq transcript (Entrez)NM_152914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NATD1
Cluster EST : UnigeneHs.654713 [ NCBI ]
CGAP (NCI)Hs.654713
Alternative Splicing GalleryENSG00000274180
Gene ExpressionNATD1 [ NCBI-GEO ]   NATD1 [ EBI - ARRAY_EXPRESS ]   NATD1 [ SEEK ]   NATD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NATD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256302
GTEX Portal (Tissue expression)NATD1
Human Protein AtlasENSG00000274180-NATD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6N6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6N6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6N6
Splice isoforms : SwissVarQ8N6N6
PhosPhoSitePlusQ8N6N6
Domaine pattern : Prosite (Expaxy)GNAT_YJDJ (PS51729)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_YJDJ   
Domain families : Pfam (Sanger)Acetyltransf_CG (PF14542)   
Domain families : Pfam (NCBI)pfam14542   
Conserved Domain (NCBI)NATD1
DMDM Disease mutations256302
Blocks (Seattle)NATD1
SuperfamilyQ8N6N6
Human Protein Atlas [tissue]ENSG00000274180-NATD1 [tissue]
Peptide AtlasQ8N6N6
HPRD17527
IPIIPI00787343   IPI00745122   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6N6
IntAct (EBI)Q8N6N6
FunCoupENSG00000274180
BioGRIDNATD1
STRING (EMBL)NATD1
ZODIACNATD1
Ontologies - Pathways
QuickGOQ8N6N6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkNATD1
Atlas of Cancer Signalling NetworkNATD1
Wikipedia pathwaysNATD1
Orthology - Evolution
OrthoDB256302
GeneTree (enSembl)ENSG00000274180
Phylogenetic Trees/Animal Genes : TreeFamNATD1
HOVERGENQ8N6N6
HOGENOMQ8N6N6
Homologs : HomoloGeneNATD1
Homology/Alignments : Family Browser (UCSC)NATD1
Gene fusions - Rearrangements
Tumor Fusion PortalNATD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNATD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NATD1
dbVarNATD1
ClinVarNATD1
1000_GenomesNATD1 
Exome Variant ServerNATD1
ExAC (Exome Aggregation Consortium)ENSG00000274180
GNOMAD BrowserENSG00000274180
Genetic variants : HAPMAP256302
Genomic Variants (DGV)NATD1 [DGVbeta]
DECIPHERNATD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNATD1 
Mutations
ICGC Data PortalNATD1 
TCGA Data PortalNATD1 
Broad Tumor PortalNATD1
OASIS PortalNATD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNATD1
BioMutasearch NATD1
DgiDB (Drug Gene Interaction Database)NATD1
DoCM (Curated mutations)NATD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NATD1 (select a term)
intoGenNATD1
Cancer3DNATD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNATD1
MedgenNATD1
Genetic Testing Registry NATD1
NextProtQ8N6N6 [Medical]
TSGene256302
GENETestsNATD1
Target ValidationNATD1
Huge Navigator NATD1 [HugePedia]
snp3D : Map Gene to Disease256302
BioCentury BCIQNATD1
ClinGenNATD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256302
Chemical/Pharm GKB GenePA164716941
Clinical trialNATD1
Miscellaneous
canSAR (ICR)NATD1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNATD1
EVEXNATD1
GoPubMedNATD1
iHOPNATD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:36:23 CET 2017

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