Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NAV1 (neuron navigator 1)

Identity

Alias_symbol (synonym)FLJ12560
FLJ14203
KIAA1151
MGC14961
POMFIL3
steerin-1
DKFZp781D0314
Other aliasSTEERIN1
UNC53H1
HGNC (Hugo) NAV1
LocusID (NCBI) 89796
Atlas_Id 54489
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201739835 and ends at 201826974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DUSP12 (1q23.3) / NAV1 (1q32.1)INO80D (2q33.3) / NAV1 (1q32.1)MAP2 (2q34) / NAV1 (1q32.1)
NAV1 (1q32.1) / NAV1 (1q32.1)NAV1 (1q32.1) / NTRK2 (9q21.33)NAV1 (1q32.1) / TGOLN2 (2p11.2)
DUSP12 1q23.3 / NAV1 1q32.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAV1   15989
Cards
Entrez_Gene (NCBI)NAV1  89796  neuron navigator 1
AliasesPOMFIL3; STEERIN1; UNC53H1
GeneCards (Weizmann)NAV1
Ensembl hg19 (Hinxton)ENSG00000134369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134369 [Gene_View]  chr1:201739835-201826974 [Contig_View]  NAV1 [Vega]
ICGC DataPortalENSG00000134369
TCGA cBioPortalNAV1
AceView (NCBI)NAV1
Genatlas (Paris)NAV1
WikiGenes89796
SOURCE (Princeton)NAV1
Genetics Home Reference (NIH)NAV1
Genomic and cartography
GoldenPath hg38 (UCSC)NAV1  -     chr1:201739835-201826974 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAV1  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblNAV1 - 1q32.1 [CytoView hg19]  NAV1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBINAV1 [Mapview hg19]  NAV1 [Mapview hg38]
OMIM611628   
Gene and transcription
Genbank (Entrez)AB032977 AB033039 AF086348 AJ488101 AK022622
RefSeq transcript (Entrez)NM_001167738 NM_020443
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAV1
Cluster EST : UnigeneHs.585374 [ NCBI ]
CGAP (NCI)Hs.585374
Alternative Splicing GalleryENSG00000134369
Gene ExpressionNAV1 [ NCBI-GEO ]   NAV1 [ EBI - ARRAY_EXPRESS ]   NAV1 [ SEEK ]   NAV1 [ MEM ]
Gene Expression Viewer (FireBrowse)NAV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89796
GTEX Portal (Tissue expression)NAV1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEY1
Splice isoforms : SwissVarQ8NEY1
PhosPhoSitePlusQ8NEY1
Domains : Interpro (EBI)AAA+_ATPase    P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)NAV1
DMDM Disease mutations89796
Blocks (Seattle)NAV1
SuperfamilyQ8NEY1
Human Protein AtlasENSG00000134369
Peptide AtlasQ8NEY1
HPRD10113
IPIIPI00171636   IPI00845310   IPI00641075   IPI00845471   IPI00845401   IPI00641137   IPI00876891   IPI00470414   IPI00550839   IPI00963834   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEY1
IntAct (EBI)Q8NEY1
FunCoupENSG00000134369
BioGRIDNAV1
STRING (EMBL)NAV1
ZODIACNAV1
Ontologies - Pathways
QuickGOQ8NEY1
Ontology : AmiGOmicrotubule bundle formation  neuron migration  cytoplasm  microtubule  axon initial segment  
Ontology : EGO-EBImicrotubule bundle formation  neuron migration  cytoplasm  microtubule  axon initial segment  
NDEx NetworkNAV1
Atlas of Cancer Signalling NetworkNAV1
Wikipedia pathwaysNAV1
Orthology - Evolution
OrthoDB89796
GeneTree (enSembl)ENSG00000134369
Phylogenetic Trees/Animal Genes : TreeFamNAV1
HOVERGENQ8NEY1
HOGENOMQ8NEY1
Homologs : HomoloGeneNAV1
Homology/Alignments : Family Browser (UCSC)NAV1
Gene fusions - Rearrangements
Fusion : MitelmanDUSP12/NAV1 [1q23.3/1q32.1]  [t(1;1)(q23;q32)]  
Fusion : MitelmanNAV1/NTRK2 [1q32.1/9q21.33]  [t(1;9)(q32;q21)]  
Fusion: TCGADUSP12 1q23.3 NAV1 1q32.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAV1
dbVarNAV1
ClinVarNAV1
1000_GenomesNAV1 
Exome Variant ServerNAV1
ExAC (Exome Aggregation Consortium)NAV1 (select the gene name)
Genetic variants : HAPMAP89796
Genomic Variants (DGV)NAV1 [DGVbeta]
DECIPHERNAV1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAV1 
Mutations
ICGC Data PortalNAV1 
TCGA Data PortalNAV1 
Broad Tumor PortalNAV1
OASIS PortalNAV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAV1
DgiDB (Drug Gene Interaction Database)NAV1
DoCM (Curated mutations)NAV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAV1 (select a term)
intoGenNAV1
Cancer3DNAV1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611628   
Orphanet
MedgenNAV1
Genetic Testing Registry NAV1
NextProtQ8NEY1 [Medical]
TSGene89796
GENETestsNAV1
Target ValidationNAV1
Huge Navigator NAV1 [HugePedia]
snp3D : Map Gene to Disease89796
BioCentury BCIQNAV1
ClinGenNAV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89796
Chemical/Pharm GKB GenePA31451
Clinical trialNAV1
Miscellaneous
canSAR (ICR)NAV1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAV1
EVEXNAV1
GoPubMedNAV1
iHOPNAV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:46:09 CEST 2017

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