Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NAV3 (neuron navigator 3)

Identity

Alias_symbol (synonym)KIAA0938
POMFIL1
HGNC (Hugo) NAV3
LocusID (NCBI) 89795
Atlas_Id 46629
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 78225069 and ends at 78606792 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPSF6 (12q15) / NAV3 (12q21.2)LRP1B (2q22.1) / NAV3 (12q21.2)NAV3 (12q21.2) / NAV3 (12q21.2)
NELL1 (11p15.1) / NAV3 (12q21.2)PDK3 (Xp22.11) / NAV3 (12q21.2)WDFY3 (4q21.23) / NAV3 (12q21.2)
CPSF6 12q15 / NAV3 12q21.2PDK3 Xp22.11 / NAV3 12q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAV3   15998
Cards
Entrez_Gene (NCBI)NAV3  89795  neuron navigator 3
AliasesPOMFIL1; STEERIN3; unc53H3
GeneCards (Weizmann)NAV3
Ensembl hg19 (Hinxton)ENSG00000067798 [Gene_View]  chr12:78225069-78606792 [Contig_View]  NAV3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000067798 [Gene_View]  chr12:78225069-78606792 [Contig_View]  NAV3 [Vega]
ICGC DataPortalENSG00000067798
TCGA cBioPortalNAV3
AceView (NCBI)NAV3
Genatlas (Paris)NAV3
WikiGenes89795
SOURCE (Princeton)NAV3
Genetics Home Reference (NIH)NAV3
Genomic and cartography
GoldenPath hg19 (UCSC)NAV3  -     chr12:78225069-78606792 +  12q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NAV3  -     12q21.2   [Description]    (hg38-Dec_2013)
EnsemblNAV3 - 12q21.2 [CytoView hg19]  NAV3 - 12q21.2 [CytoView hg38]
Mapping of homologs : NCBINAV3 [Mapview hg19]  NAV3 [Mapview hg38]
OMIM611629   
Gene and transcription
Genbank (Entrez)AB023155 AF397731 AJ488201 AK022070 AK294988
RefSeq transcript (Entrez)NM_001024383 NM_014903
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)NAV3
Cluster EST : UnigeneHs.655301 [ NCBI ]
CGAP (NCI)Hs.655301
Alternative Splicing GalleryENSG00000067798
Gene ExpressionNAV3 [ NCBI-GEO ]   NAV3 [ EBI - ARRAY_EXPRESS ]   NAV3 [ SEEK ]   NAV3 [ MEM ]
Gene Expression Viewer (FireBrowse)NAV3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89795
GTEX Portal (Tissue expression)NAV3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVL0
Splice isoforms : SwissVarQ8IVL0
PhosPhoSitePlusQ8IVL0
Domaine pattern : Prosite (Expaxy)CH (PS50021)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    CH-domain    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    CH (PF00307)   
Domain families : Pfam (NCBI)pfam00004    pfam00307   
Domain families : Smart (EMBL)AAA (SM00382)  CH (SM00033)  
Conserved Domain (NCBI)NAV3
DMDM Disease mutations89795
Blocks (Seattle)NAV3
SuperfamilyQ8IVL0
Human Protein AtlasENSG00000067798
Peptide AtlasQ8IVL0
HPRD10114
IPIIPI00217051   IPI00742959   IPI00333276   IPI00873753   IPI01022516   IPI01010575   IPI01018869   IPI01009771   IPI01022317   IPI01022036   IPI01021820   IPI00975618   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVL0
IntAct (EBI)Q8IVL0
FunCoupENSG00000067798
BioGRIDNAV3
STRING (EMBL)NAV3
ZODIACNAV3
Ontologies - Pathways
QuickGOQ8IVL0
Ontology : AmiGOATP binding  nuclear outer membrane  
Ontology : EGO-EBIATP binding  nuclear outer membrane  
NDEx NetworkNAV3
Atlas of Cancer Signalling NetworkNAV3
Wikipedia pathwaysNAV3
Orthology - Evolution
OrthoDB89795
GeneTree (enSembl)ENSG00000067798
Phylogenetic Trees/Animal Genes : TreeFamNAV3
HOVERGENQ8IVL0
HOGENOMQ8IVL0
Homologs : HomoloGeneNAV3
Homology/Alignments : Family Browser (UCSC)NAV3
Gene fusions - Rearrangements
Fusion : MitelmanCPSF6/NAV3 [12q15/12q21.2]  [t(12;12)(q15;q21)]  
Fusion : MitelmanNELL1/NAV3 [11p15.1/12q21.2]  [t(11;12)(p15;q21)]  
Fusion : MitelmanPDK3/NAV3 [Xp22.11/12q21.2]  [t(X;12)(p22;q21)]  
Fusion: TCGACPSF6 12q15 NAV3 12q21.2 BRCA
Fusion: TCGAPDK3 Xp22.11 NAV3 12q21.2 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAV3
dbVarNAV3
ClinVarNAV3
1000_GenomesNAV3 
Exome Variant ServerNAV3
ExAC (Exome Aggregation Consortium)NAV3 (select the gene name)
Genetic variants : HAPMAP89795
Genomic Variants (DGV)NAV3 [DGVbeta]
DECIPHER (Syndromes)12:78225069-78606792  ENSG00000067798
CONAN: Copy Number AnalysisNAV3 
Mutations
ICGC Data PortalNAV3 
TCGA Data PortalNAV3 
Broad Tumor PortalNAV3
OASIS PortalNAV3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAV3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAV3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAV3
DgiDB (Drug Gene Interaction Database)NAV3
DoCM (Curated mutations)NAV3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAV3 (select a term)
intoGenNAV3
Cancer3DNAV3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611629   
Orphanet
MedgenNAV3
Genetic Testing Registry NAV3
NextProtQ8IVL0 [Medical]
TSGene89795
GENETestsNAV3
Huge Navigator NAV3 [HugePedia]
snp3D : Map Gene to Disease89795
BioCentury BCIQNAV3
ClinGenNAV3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89795
Chemical/Pharm GKB GenePA31453
Clinical trialNAV3
Miscellaneous
canSAR (ICR)NAV3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAV3
EVEXNAV3
GoPubMedNAV3
iHOPNAV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:45:24 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.