Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NAXE (NAD(P)HX epimerase)

Identity

Other aliasAIBP
APOA1BP
PEBEL
YJEFN1
HGNC (Hugo) NAXE
LocusID (NCBI) 128240
Atlas_Id 56999
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156591766 and ends at 156594299 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAXE   18453
Cards
Entrez_Gene (NCBI)NAXE  128240  NAD(P)HX epimerase
AliasesAIBP; APOA1BP; PEBEL; YJEFN1
GeneCards (Weizmann)NAXE
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:156591766-156594299 [Contig_View]  NAXE [Vega]
TCGA cBioPortalNAXE
AceView (NCBI)NAXE
Genatlas (Paris)NAXE
WikiGenes128240
SOURCE (Princeton)NAXE
Genetics Home Reference (NIH)NAXE
Genomic and cartography
GoldenPath hg38 (UCSC)NAXE  -     chr1:156591766-156594299 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAXE  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblNAXE - 1q22 [CytoView hg19]  NAXE - 1q22 [CytoView hg38]
Mapping of homologs : NCBINAXE [Mapview hg19]  NAXE [Mapview hg38]
OMIM608862   617186   
Gene and transcription
Genbank (Entrez)AJ315849 AK294835 AK298222 AK316083 BC056917
RefSeq transcript (Entrez)NM_144772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAXE
Cluster EST : UnigeneHs.528320 [ NCBI ]
CGAP (NCI)Hs.528320
Gene ExpressionNAXE [ NCBI-GEO ]   NAXE [ EBI - ARRAY_EXPRESS ]   NAXE [ SEEK ]   NAXE [ MEM ]
Gene Expression Viewer (FireBrowse)NAXE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128240
GTEX Portal (Tissue expression)NAXE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCW5
Splice isoforms : SwissVarQ8NCW5
Catalytic activity : Enzyme5.1.99.6 [ Enzyme-Expasy ]   5.1.99.65.1.99.6 [ IntEnz-EBI ]   5.1.99.6 [ BRENDA ]   5.1.99.6 [ KEGG ]   
PhosPhoSitePlusQ8NCW5
Domaine pattern : Prosite (Expaxy)YJEF_N (PS51385)   
Domains : Interpro (EBI)YjeF_N_dom    YJEFN_prot_eukaryotes   
Domain families : Pfam (Sanger)YjeF_N (PF03853)   
Domain families : Pfam (NCBI)pfam03853   
Conserved Domain (NCBI)NAXE
DMDM Disease mutations128240
Blocks (Seattle)NAXE
SuperfamilyQ8NCW5
Peptide AtlasQ8NCW5
IPIIPI00941988   IPI00848298   IPI00168479   IPI00448169   IPI00514157   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCW5
IntAct (EBI)Q8NCW5
BioGRIDNAXE
STRING (EMBL)NAXE
ZODIACNAXE
Ontologies - Pathways
QuickGOQ8NCW5
Ontology : AmiGOnucleotide binding  protein binding  extracellular region  extracellular space  nucleoplasm  mitochondrion  mitochondrial matrix  cytosol  cilium  NADH metabolic process  NADP metabolic process  biological_process  NAD biosynthesis via nicotinamide riboside salvage pathway  protein homodimerization activity  intracellular membrane-bounded organelle  cell body  nicotinamide nucleotide metabolic process  metal ion binding  protein homotetramerization  NADHX epimerase activity  NADPHX epimerase activity  NADPHX epimerase activity  extracellular exosome  
Ontology : EGO-EBInucleotide binding  protein binding  extracellular region  extracellular space  nucleoplasm  mitochondrion  mitochondrial matrix  cytosol  cilium  NADH metabolic process  NADP metabolic process  biological_process  NAD biosynthesis via nicotinamide riboside salvage pathway  protein homodimerization activity  intracellular membrane-bounded organelle  cell body  nicotinamide nucleotide metabolic process  metal ion binding  protein homotetramerization  NADHX epimerase activity  NADPHX epimerase activity  NADPHX epimerase activity  extracellular exosome  
NDEx NetworkNAXE
Atlas of Cancer Signalling NetworkNAXE
Wikipedia pathwaysNAXE
Orthology - Evolution
OrthoDB128240
Phylogenetic Trees/Animal Genes : TreeFamNAXE
HOVERGENQ8NCW5
HOGENOMQ8NCW5
Homologs : HomoloGeneNAXE
Homology/Alignments : Family Browser (UCSC)NAXE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAXE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAXE
dbVarNAXE
ClinVarNAXE
1000_GenomesNAXE 
Exome Variant ServerNAXE
ExAC (Exome Aggregation Consortium)NAXE (select the gene name)
Genetic variants : HAPMAP128240
Genomic Variants (DGV)NAXE [DGVbeta]
DECIPHERNAXE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAXE 
Mutations
ICGC Data PortalNAXE 
TCGA Data PortalNAXE 
Broad Tumor PortalNAXE
OASIS PortalNAXE [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNAXE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAXE
DgiDB (Drug Gene Interaction Database)NAXE
DoCM (Curated mutations)NAXE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAXE (select a term)
intoGenNAXE
Cancer3DNAXE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608862    617186   
Orphanet
MedgenNAXE
Genetic Testing Registry NAXE
NextProtQ8NCW5 [Medical]
TSGene128240
GENETestsNAXE
Target ValidationNAXE
Huge Navigator NAXE [HugePedia]
snp3D : Map Gene to Disease128240
BioCentury BCIQNAXE
ClinGenNAXE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128240
Chemical/Pharm GKB GenePA38538
Clinical trialNAXE
Miscellaneous
canSAR (ICR)NAXE (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAXE
EVEXNAXE
GoPubMedNAXE
iHOPNAXE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:01:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.