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NBDY (negative regulator of P-body association)

Identity

Alias_namesLINC01420
long intergenic non-protein coding RNA 1420
Alias_symbol (synonym)NoBody
Other alias
HGNC (Hugo) NBDY
LocusID (NCBI) 550643
Atlas_Id 78871
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 56729219 and ends at 56819178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBDY   50713
Cards
Entrez_Gene (NCBI)NBDY  550643  negative regulator of P-body association
AliasesLINC01420; NoBody
GeneCards (Weizmann)NBDY
Ensembl hg19 (Hinxton)ENSG00000204272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204272 [Gene_View]  chrX:56729219-56819178 [Contig_View]  NBDY [Vega]
ICGC DataPortalENSG00000204272
TCGA cBioPortalNBDY
AceView (NCBI)NBDY
Genatlas (Paris)NBDY
WikiGenes550643
SOURCE (Princeton)NBDY
Genetics Home Reference (NIH)NBDY
Genomic and cartography
GoldenPath hg38 (UCSC)NBDY  -     chrX:56729219-56819178 +  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBDY  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblNBDY - Xp11.21 [CytoView hg19]  NBDY - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBINBDY [Mapview hg19]  NBDY [Mapview hg38]
OMIM300992   
Gene and transcription
Genbank (Entrez)AA131515 BC048131 BC053960 BC053962 BC062451
RefSeq transcript (Entrez)NM_001348129
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBDY
Cluster EST : UnigeneHs.355559 [ NCBI ]
CGAP (NCI)Hs.355559
Alternative Splicing GalleryENSG00000204272
Gene ExpressionNBDY [ NCBI-GEO ]   NBDY [ EBI - ARRAY_EXPRESS ]   NBDY [ SEEK ]   NBDY [ MEM ]
Gene Expression Viewer (FireBrowse)NBDY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)550643
GTEX Portal (Tissue expression)NBDY
Human Protein AtlasENSG00000204272-NBDY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A0U1RRE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A0U1RRE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A0U1RRE5
Splice isoforms : SwissVarA0A0U1RRE5
PhosPhoSitePlusA0A0U1RRE5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NBDY
DMDM Disease mutations550643
Blocks (Seattle)NBDY
SuperfamilyA0A0U1RRE5
Human Protein Atlas [tissue]ENSG00000204272-NBDY [tissue]
Peptide AtlasA0A0U1RRE5
IPIIPI00470555   
Protein Interaction databases
DIP (DOE-UCLA)A0A0U1RRE5
IntAct (EBI)A0A0U1RRE5
FunCoupENSG00000204272
BioGRIDNBDY
STRING (EMBL)NBDY
ZODIACNBDY
Ontologies - Pathways
QuickGOA0A0U1RRE5
Ontology : AmiGOP-body  nuclear-transcribed mRNA catabolic process  protein binding  mRNA processing  negative regulation of cytoplasmic mRNA processing body assembly  
Ontology : EGO-EBIP-body  nuclear-transcribed mRNA catabolic process  protein binding  mRNA processing  negative regulation of cytoplasmic mRNA processing body assembly  
NDEx NetworkNBDY
Atlas of Cancer Signalling NetworkNBDY
Wikipedia pathwaysNBDY
Orthology - Evolution
OrthoDB550643
GeneTree (enSembl)ENSG00000204272
Phylogenetic Trees/Animal Genes : TreeFamNBDY
HOVERGENA0A0U1RRE5
HOGENOMA0A0U1RRE5
Homologs : HomoloGeneNBDY
Homology/Alignments : Family Browser (UCSC)NBDY
Gene fusions - Rearrangements
Tumor Fusion PortalNBDY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBDY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBDY
dbVarNBDY
ClinVarNBDY
1000_GenomesNBDY 
Exome Variant ServerNBDY
ExAC (Exome Aggregation Consortium)ENSG00000204272
GNOMAD BrowserENSG00000204272
Genetic variants : HAPMAP550643
Genomic Variants (DGV)NBDY [DGVbeta]
DECIPHERNBDY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBDY 
Mutations
ICGC Data PortalNBDY 
TCGA Data PortalNBDY 
Broad Tumor PortalNBDY
OASIS PortalNBDY [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBDY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBDY
DgiDB (Drug Gene Interaction Database)NBDY
DoCM (Curated mutations)NBDY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBDY (select a term)
intoGenNBDY
Cancer3DNBDY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300992   
Orphanet
DisGeNETNBDY
MedgenNBDY
Genetic Testing Registry NBDY
NextProtA0A0U1RRE5 [Medical]
TSGene550643
GENETestsNBDY
Target ValidationNBDY
Huge Navigator NBDY [HugePedia]
snp3D : Map Gene to Disease550643
BioCentury BCIQNBDY
ClinGenNBDY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD550643
Clinical trialNBDY
Miscellaneous
canSAR (ICR)NBDY (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBDY
EVEXNBDY
GoPubMedNBDY
iHOPNBDY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:14 CET 2017

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