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NBPF1 (NBPF member 1)

Identity

Alias_namesneuroblastoma breakpoint family
Alias_symbol (synonym)FLJ20719
KIAA1693
Other aliasAB13
AB14
AB23
AD2
NBG
NBPF
HGNC (Hugo) NBPF1
LocusID (NCBI) 55672
Atlas_Id 53647
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16562427 and ends at 16613605 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NBPF1 (1p36.13) / ASIC2 (17q11.2)NBPF1 (1p36.13) / TAPT1 (4p15.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF1   26088
Cards
Entrez_Gene (NCBI)NBPF1  55672  NBPF member 1
AliasesAB13; AB14; AB23; AD2; 
NBG; NBPF
GeneCards (Weizmann)NBPF1
Ensembl hg19 (Hinxton)ENSG00000219481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219481 [Gene_View]  chr1:16562427-16613605 [Contig_View]  NBPF1 [Vega]
ICGC DataPortalENSG00000219481
TCGA cBioPortalNBPF1
AceView (NCBI)NBPF1
Genatlas (Paris)NBPF1
WikiGenes55672
SOURCE (Princeton)NBPF1
Genetics Home Reference (NIH)NBPF1
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF1  -     chr1:16562427-16613605 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF1  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblNBPF1 - 1p36.13 [CytoView hg19]  NBPF1 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBINBPF1 [Mapview hg19]  NBPF1 [Mapview hg38]
OMIM610501   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_017940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF1
Cluster EST : UnigeneHs.745004 [ NCBI ]
CGAP (NCI)Hs.745004
Alternative Splicing GalleryENSG00000219481
Gene ExpressionNBPF1 [ NCBI-GEO ]   NBPF1 [ EBI - ARRAY_EXPRESS ]   NBPF1 [ SEEK ]   NBPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55672
GTEX Portal (Tissue expression)NBPF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3BBV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3BBV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3BBV0
Splice isoforms : SwissVarQ3BBV0
PhosPhoSitePlusQ3BBV0
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF1
DMDM Disease mutations55672
Blocks (Seattle)NBPF1
SuperfamilyQ3BBV0
Human Protein AtlasENSG00000219481
Peptide AtlasQ3BBV0
HPRD07946
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
DIP (DOE-UCLA)Q3BBV0
IntAct (EBI)Q3BBV0
FunCoupENSG00000219481
BioGRIDNBPF1
STRING (EMBL)NBPF1
ZODIACNBPF1
Ontologies - Pathways
QuickGOQ3BBV0
Ontology : AmiGOcytoplasm  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIcytoplasm  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkNBPF1
Atlas of Cancer Signalling NetworkNBPF1
Wikipedia pathwaysNBPF1
Orthology - Evolution
OrthoDB55672
GeneTree (enSembl)ENSG00000219481
Phylogenetic Trees/Animal Genes : TreeFamNBPF1
HOVERGENQ3BBV0
HOGENOMQ3BBV0
Homologs : HomoloGeneNBPF1
Homology/Alignments : Family Browser (UCSC)NBPF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF1
dbVarNBPF1
ClinVarNBPF1
1000_GenomesNBPF1 
Exome Variant ServerNBPF1
ExAC (Exome Aggregation Consortium)NBPF1 (select the gene name)
Genetic variants : HAPMAP55672
Genomic Variants (DGV)NBPF1 [DGVbeta]
DECIPHERNBPF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF1 
Mutations
ICGC Data PortalNBPF1 
TCGA Data PortalNBPF1 
Broad Tumor PortalNBPF1
OASIS PortalNBPF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF1
DgiDB (Drug Gene Interaction Database)NBPF1
DoCM (Curated mutations)NBPF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF1 (select a term)
intoGenNBPF1
Cancer3DNBPF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610501   
Orphanet
MedgenNBPF1
Genetic Testing Registry NBPF1
NextProtQ3BBV0 [Medical]
TSGene55672
GENETestsNBPF1
Target ValidationNBPF1
Huge Navigator NBPF1 [HugePedia]
snp3D : Map Gene to Disease55672
BioCentury BCIQNBPF1
ClinGenNBPF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55672
Chemical/Pharm GKB GenePA128395786
Clinical trialNBPF1
Miscellaneous
canSAR (ICR)NBPF1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF1
EVEXNBPF1
GoPubMedNBPF1
iHOPNBPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:12 CEST 2017

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