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NBPF10 (NBPF member 10)

Identity

Alias_namesneuroblastoma breakpoint family
Alias_symbol (synonym)AG1
Other aliasAB6
NBPF9
HGNC (Hugo) NBPF10
LocusID (NCBI) 100132406
Atlas_Id 56402
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 146066318 and ends at 146144804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOTCH2NL (1q21.1) / NBPF10 (1q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;1)(q21;q21) NOTCH2NL/NBPF10


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 5 ]
  t(1;1)(q21;q21) NOTCH2NL/NBPF10
t(1;1)(q21;q21) NOTCH2NL/NBPF10
t(1;1)(q21;q21) NOTCH2NL/NBPF10
t(1;1)(q21;q21) NOTCH2NL/NBPF10
t(1;1)(q21;q21) NOTCH2NL/NBPF10


External links

Nomenclature
HGNC (Hugo)NBPF10   31992
Cards
Entrez_Gene (NCBI)NBPF10  100132406  NBPF member 10
AliasesAB6; AG1; NBPF9
GeneCards (Weizmann)NBPF10
Ensembl hg19 (Hinxton)ENSG00000271425 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271425 [Gene_View]  ENSG00000271425 [Sequence]  chr1:146066318-146144804 [Contig_View]  NBPF10 [Vega]
ICGC DataPortalENSG00000271425
TCGA cBioPortalNBPF10
AceView (NCBI)NBPF10
Genatlas (Paris)NBPF10
WikiGenes100132406
SOURCE (Princeton)NBPF10
Genetics Home Reference (NIH)NBPF10
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF10  -     chr1:146066318-146144804 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF10  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblNBPF10 - 1q21.1 [CytoView hg19]  NBPF10 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBINBPF10 [Mapview hg19]  NBPF10 [Mapview hg38]
OMIM614000   
Gene and transcription
Genbank (Entrez)AF379616 AF379632 AF379634 AF379635 AF380580
RefSeq transcript (Entrez)NM_001039703 NM_001302371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF10
Cluster EST : UnigeneHs.721588 [ NCBI ]
CGAP (NCI)Hs.721588
Alternative Splicing GalleryENSG00000271425
Gene ExpressionNBPF10 [ NCBI-GEO ]   NBPF10 [ EBI - ARRAY_EXPRESS ]   NBPF10 [ SEEK ]   NBPF10 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132406
GTEX Portal (Tissue expression)NBPF10
Human Protein AtlasENSG00000271425-NBPF10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3W6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P3W6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P3W6
Splice isoforms : SwissVarQ6P3W6
PhosPhoSitePlusQ6P3W6
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF10
DMDM Disease mutations100132406
Blocks (Seattle)NBPF10
SuperfamilyQ6P3W6
Human Protein Atlas [tissue]ENSG00000271425-NBPF10 [tissue]
Peptide AtlasQ6P3W6
Protein Interaction databases
DIP (DOE-UCLA)Q6P3W6
IntAct (EBI)Q6P3W6
FunCoupENSG00000271425
BioGRIDNBPF10
STRING (EMBL)NBPF10
ZODIACNBPF10
Ontologies - Pathways
QuickGOQ6P3W6
Ontology : AmiGORNA binding  cytoplasm  
Ontology : EGO-EBIRNA binding  cytoplasm  
NDEx NetworkNBPF10
Atlas of Cancer Signalling NetworkNBPF10
Wikipedia pathwaysNBPF10
Orthology - Evolution
OrthoDB100132406
GeneTree (enSembl)ENSG00000271425
Phylogenetic Trees/Animal Genes : TreeFamNBPF10
HOVERGENQ6P3W6
HOGENOMQ6P3W6
Homologs : HomoloGeneNBPF10
Homology/Alignments : Family Browser (UCSC)NBPF10
Gene fusions - Rearrangements
Fusion : QuiverNBPF10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF10
dbVarNBPF10
ClinVarNBPF10
1000_GenomesNBPF10 
Exome Variant ServerNBPF10
ExAC (Exome Aggregation Consortium)ENSG00000271425
GNOMAD BrowserENSG00000271425
Genetic variants : HAPMAP100132406
Genomic Variants (DGV)NBPF10 [DGVbeta]
DECIPHERNBPF10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF10 
Mutations
ICGC Data PortalNBPF10 
TCGA Data PortalNBPF10 
Broad Tumor PortalNBPF10
OASIS PortalNBPF10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF10
DgiDB (Drug Gene Interaction Database)NBPF10
DoCM (Curated mutations)NBPF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF10 (select a term)
intoGenNBPF10
Cancer3DNBPF10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614000   
Orphanet
DisGeNETNBPF10
MedgenNBPF10
Genetic Testing Registry NBPF10
NextProtQ6P3W6 [Medical]
TSGene100132406
GENETestsNBPF10
Target ValidationNBPF10
Huge Navigator NBPF10 [HugePedia]
snp3D : Map Gene to Disease100132406
BioCentury BCIQNBPF10
ClinGenNBPF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132406
Chemical/Pharm GKB GenePA142671290
Clinical trialNBPF10
Miscellaneous
canSAR (ICR)NBPF10 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF10
EVEXNBPF10
GoPubMedNBPF10
iHOPNBPF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:39:29 CEST 2018

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