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NBPF11 (NBPF member 11)

Identity

Alias_namesNBPF24
neuroblastoma breakpoint family, member 24
neuroblastoma breakpoint family, member 11
Other alias
HGNC (Hugo) NBPF11
LocusID (NCBI) 200030
Atlas_Id 56232
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 148102046 and ends at 148152190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AES (19p13.3) / NBPF11 (1q21.1)CSNK1G2 (19p13.3) / NBPF11 (1q21.1)NBPF11 (1q21.1) / CDC42BPB (14q32.32)
NBPF11 (1q21.1) / GPR107 (9q34.11)NBPF11 (1q21.1) / NBPF11 (1q21.1)NBPF11 (1q21.1) / NBPF14 (1q21.2)
NBPF11 (1q21.1) / ZNF407 (18q22.3)NBPF14 (1q21.2) / NBPF11 (1q21.1)NBPF9 (1q21.1) / NBPF11 (1q21.1)
SIK3 (11q23.3) / NBPF11 (1q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF11   31993
Cards
Entrez_Gene (NCBI)NBPF11  200030  NBPF member 11
AliasesNBPF24
GeneCards (Weizmann)NBPF11
Ensembl hg19 (Hinxton)ENSG00000263956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263956 [Gene_View]  ENSG00000263956 [Sequence]  chr1:148102046-148152190 [Contig_View]  NBPF11 [Vega]
ICGC DataPortalENSG00000263956
TCGA cBioPortalNBPF11
AceView (NCBI)NBPF11
Genatlas (Paris)NBPF11
WikiGenes200030
SOURCE (Princeton)NBPF11
Genetics Home Reference (NIH)NBPF11
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF11  -     chr1:148102046-148152190 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF11  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblNBPF11 - 1q21.2 [CytoView hg19]  NBPF11 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBINBPF11 [Mapview hg19]  NBPF11 [Mapview hg38]
OMIM614001   
Gene and transcription
Genbank (Entrez)AF419617 AK054850 AK302413 AL832622 BC136292
RefSeq transcript (Entrez)NM_001101663 NM_183372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF11
Cluster EST : UnigeneHs.744018 [ NCBI ]
CGAP (NCI)Hs.744018
Alternative Splicing GalleryENSG00000263956
Gene ExpressionNBPF11 [ NCBI-GEO ]   NBPF11 [ EBI - ARRAY_EXPRESS ]   NBPF11 [ SEEK ]   NBPF11 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200030
GTEX Portal (Tissue expression)NBPF11
Human Protein AtlasENSG00000263956-NBPF11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T75
Splice isoforms : SwissVarQ86T75
PhosPhoSitePlusQ86T75
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF11
DMDM Disease mutations200030
Blocks (Seattle)NBPF11
SuperfamilyQ86T75
Human Protein Atlas [tissue]ENSG00000263956-NBPF11 [tissue]
Peptide AtlasQ86T75
HPRD14123
Protein Interaction databases
DIP (DOE-UCLA)Q86T75
IntAct (EBI)Q86T75
FunCoupENSG00000263956
BioGRIDNBPF11
STRING (EMBL)NBPF11
ZODIACNBPF11
Ontologies - Pathways
QuickGOQ86T75
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF11
Atlas of Cancer Signalling NetworkNBPF11
Wikipedia pathwaysNBPF11
Orthology - Evolution
OrthoDB200030
GeneTree (enSembl)ENSG00000263956
Phylogenetic Trees/Animal Genes : TreeFamNBPF11
HOVERGENQ86T75
HOGENOMQ86T75
Homologs : HomoloGeneNBPF11
Homology/Alignments : Family Browser (UCSC)NBPF11
Gene fusions - Rearrangements
Fusion : QuiverNBPF11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF11
dbVarNBPF11
ClinVarNBPF11
1000_GenomesNBPF11 
Exome Variant ServerNBPF11
ExAC (Exome Aggregation Consortium)ENSG00000263956
GNOMAD BrowserENSG00000263956
Varsome BrowserNBPF11
Genetic variants : HAPMAP200030
Genomic Variants (DGV)NBPF11 [DGVbeta]
DECIPHERNBPF11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF11 
Mutations
ICGC Data PortalNBPF11 
TCGA Data PortalNBPF11 
Broad Tumor PortalNBPF11
OASIS PortalNBPF11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF11
DgiDB (Drug Gene Interaction Database)NBPF11
DoCM (Curated mutations)NBPF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF11 (select a term)
intoGenNBPF11
Cancer3DNBPF11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614001   
Orphanet
DisGeNETNBPF11
MedgenNBPF11
Genetic Testing Registry NBPF11
NextProtQ86T75 [Medical]
TSGene200030
GENETestsNBPF11
Target ValidationNBPF11
Huge Navigator NBPF11 [HugePedia]
snp3D : Map Gene to Disease200030
BioCentury BCIQNBPF11
ClinGenNBPF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200030
Chemical/Pharm GKB GenePA142671291
Clinical trialNBPF11
Miscellaneous
canSAR (ICR)NBPF11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF11
EVEXNBPF11
GoPubMedNBPF11
iHOPNBPF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:39:52 CEST 2018

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