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NBPF12 (neuroblastoma breakpoint family member 12)

Identity

Alias_namesKIAA1245
KIAA1245
neuroblastoma breakpoint family, member 12
Alias_symbol (synonym)COAS1
Other alias
HGNC (Hugo) NBPF12
LocusID (NCBI) 149013
Atlas_Id 41063
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 146373857 and ends at 146467639 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF12   24297
Cards
Entrez_Gene (NCBI)NBPF12  149013  neuroblastoma breakpoint family member 12
AliasesCOAS1; KIAA1245
GeneCards (Weizmann)NBPF12
Ensembl hg19 (Hinxton)ENSG00000268043 [Gene_View]  chr1:146373857-146467639 [Contig_View]  NBPF12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000268043 [Gene_View]  chr1:146373857-146467639 [Contig_View]  NBPF12 [Vega]
ICGC DataPortalENSG00000268043
TCGA cBioPortalNBPF12
AceView (NCBI)NBPF12
Genatlas (Paris)NBPF12
WikiGenes149013
SOURCE (Princeton)NBPF12
Genetics Home Reference (NIH)NBPF12
Genomic and cartography
GoldenPath hg19 (UCSC)NBPF12  -     chr1:146373857-146467639 +  1q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NBPF12  -     1q21.1   [Description]    (hg38-Dec_2013)
EnsemblNBPF12 - 1q21.1 [CytoView hg19]  NBPF12 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBINBPF12 [Mapview hg19]  NBPF12 [Mapview hg38]
OMIM608607   
Gene and transcription
Genbank (Entrez)AB033071 AF131738 AL040349
RefSeq transcript (Entrez)NM_001278141
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)NBPF12
Cluster EST : UnigeneHs.721588 [ NCBI ]
CGAP (NCI)Hs.721588
Alternative Splicing GalleryENSG00000268043
Gene ExpressionNBPF12 [ NCBI-GEO ]   NBPF12 [ EBI - ARRAY_EXPRESS ]   NBPF12 [ SEEK ]   NBPF12 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149013
GTEX Portal (Tissue expression)NBPF12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TAG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TAG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TAG4
Splice isoforms : SwissVarQ5TAG4
PhosPhoSitePlusQ5TAG4
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Conserved Domain (NCBI)NBPF12
DMDM Disease mutations149013
Blocks (Seattle)NBPF12
SuperfamilyQ5TAG4
Human Protein AtlasENSG00000268043
Peptide AtlasQ5TAG4
Protein Interaction databases
DIP (DOE-UCLA)Q5TAG4
IntAct (EBI)Q5TAG4
FunCoupENSG00000268043
BioGRIDNBPF12
STRING (EMBL)NBPF12
ZODIACNBPF12
Ontologies - Pathways
QuickGOQ5TAG4
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF12
Atlas of Cancer Signalling NetworkNBPF12
Wikipedia pathwaysNBPF12
Orthology - Evolution
OrthoDB149013
GeneTree (enSembl)ENSG00000268043
Phylogenetic Trees/Animal Genes : TreeFamNBPF12
HOVERGENQ5TAG4
HOGENOMQ5TAG4
Homologs : HomoloGeneNBPF12
Homology/Alignments : Family Browser (UCSC)NBPF12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF12
dbVarNBPF12
ClinVarNBPF12
1000_GenomesNBPF12 
Exome Variant ServerNBPF12
ExAC (Exome Aggregation Consortium)NBPF12 (select the gene name)
Genetic variants : HAPMAP149013
Genomic Variants (DGV)NBPF12 [DGVbeta]
DECIPHER (Syndromes)1:146373857-146467639  ENSG00000268043
CONAN: Copy Number AnalysisNBPF12 
Mutations
ICGC Data PortalNBPF12 
TCGA Data PortalNBPF12 
Broad Tumor PortalNBPF12
OASIS PortalNBPF12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNBPF12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNBPF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF12
DgiDB (Drug Gene Interaction Database)NBPF12
DoCM (Curated mutations)NBPF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF12 (select a term)
intoGenNBPF12
Cancer3DNBPF12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608607   
Orphanet
MedgenNBPF12
Genetic Testing Registry NBPF12
NextProtQ5TAG4 [Medical]
TSGene149013
GENETestsNBPF12
Huge Navigator NBPF12 [HugePedia]
snp3D : Map Gene to Disease149013
BioCentury BCIQNBPF12
ClinGenNBPF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149013
Chemical/Pharm GKB GenePA142671602
Clinical trialNBPF12
Miscellaneous
canSAR (ICR)NBPF12 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF12
EVEXNBPF12
GoPubMedNBPF12
iHOPNBPF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:18:13 CET 2017

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