Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NBPF14 (NBPF member 14)

Identity

Alias_namesneuroblastoma breakpoint family
Alias_symbol (synonym)DJ328E19.C1.1
Other aliasNBPF
HGNC (Hugo) NBPF14
LocusID (NCBI) 25832
Atlas_Id 56022
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 148531385 and ends at 148595717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD9 (12p13.31) / NBPF14 (1q21.2)KLC1 (14q32.33) / NBPF14 (1q21.2)KLF13 (15q13.3) / NBPF14 (1q21.2)
LOC100286793 () / NBPF14 (1q21.2)MGMT (10q26.3) / NBPF14 (1q21.2)NBPF11 (1q21.1) / NBPF14 (1q21.2)
NBPF14 (1q21.2) / ANKRD10 (13q34)NBPF14 (1q21.2) / C1orf112 (1q24.2)NBPF14 (1q21.2) / NBPF11 (1q21.1)
NBPF14 (1q21.2) / NPHP3-ACAD11 (3q22.1)NBPF14 (1q21.2) / STK10 (5q35.1)NBPF9 (1q21.1) / NBPF14 (1q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF14   25232
Cards
Entrez_Gene (NCBI)NBPF14  25832  NBPF member 14
AliasesDJ328E19.C1.1; NBPF
GeneCards (Weizmann)NBPF14
Ensembl hg19 (Hinxton)ENSG00000270629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270629 [Gene_View]  chr1:148531385-148595717 [Contig_View]  NBPF14 [Vega]
ICGC DataPortalENSG00000270629
TCGA cBioPortalNBPF14
AceView (NCBI)NBPF14
Genatlas (Paris)NBPF14
WikiGenes25832
SOURCE (Princeton)NBPF14
Genetics Home Reference (NIH)NBPF14
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF14  -     chr1:148531385-148595717 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF14  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblNBPF14 - 1q21.2 [CytoView hg19]  NBPF14 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBINBPF14 [Mapview hg19]  NBPF14 [Mapview hg38]
OMIM614003   
Gene and transcription
Genbank (Entrez)AF161426 AF379626 AF379631 AK095459 AL117237
RefSeq transcript (Entrez)NM_015383
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF14
Cluster EST : UnigeneHs.714127 [ NCBI ]
CGAP (NCI)Hs.714127
Alternative Splicing GalleryENSG00000270629
Gene ExpressionNBPF14 [ NCBI-GEO ]   NBPF14 [ EBI - ARRAY_EXPRESS ]   NBPF14 [ SEEK ]   NBPF14 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25832
GTEX Portal (Tissue expression)NBPF14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TI25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TI25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TI25
Splice isoforms : SwissVarQ5TI25
PhosPhoSitePlusQ5TI25
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF14
DMDM Disease mutations25832
Blocks (Seattle)NBPF14
SuperfamilyQ5TI25
Human Protein AtlasENSG00000270629
Peptide AtlasQ5TI25
HPRD13148
Protein Interaction databases
DIP (DOE-UCLA)Q5TI25
IntAct (EBI)Q5TI25
FunCoupENSG00000270629
BioGRIDNBPF14
STRING (EMBL)NBPF14
ZODIACNBPF14
Ontologies - Pathways
QuickGOQ5TI25
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF14
Atlas of Cancer Signalling NetworkNBPF14
Wikipedia pathwaysNBPF14
Orthology - Evolution
OrthoDB25832
GeneTree (enSembl)ENSG00000270629
Phylogenetic Trees/Animal Genes : TreeFamNBPF14
HOVERGENQ5TI25
HOGENOMQ5TI25
Homologs : HomoloGeneNBPF14
Homology/Alignments : Family Browser (UCSC)NBPF14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF14
dbVarNBPF14
ClinVarNBPF14
1000_GenomesNBPF14 
Exome Variant ServerNBPF14
ExAC (Exome Aggregation Consortium)NBPF14 (select the gene name)
Genetic variants : HAPMAP25832
Genomic Variants (DGV)NBPF14 [DGVbeta]
DECIPHERNBPF14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF14 
Mutations
ICGC Data PortalNBPF14 
TCGA Data PortalNBPF14 
Broad Tumor PortalNBPF14
OASIS PortalNBPF14 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF14
DgiDB (Drug Gene Interaction Database)NBPF14
DoCM (Curated mutations)NBPF14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF14 (select a term)
intoGenNBPF14
Cancer3DNBPF14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614003   
Orphanet
MedgenNBPF14
Genetic Testing Registry NBPF14
NextProtQ5TI25 [Medical]
TSGene25832
GENETestsNBPF14
Target ValidationNBPF14
Huge Navigator NBPF14 [HugePedia]
snp3D : Map Gene to Disease25832
BioCentury BCIQNBPF14
ClinGenNBPF14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25832
Chemical/Pharm GKB GenePA142671273
Clinical trialNBPF14
Miscellaneous
canSAR (ICR)NBPF14 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF14
EVEXNBPF14
GoPubMedNBPF14
iHOPNBPF14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:46:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.