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NBPF15 (NBPF member 15)

Identity

Alias_namesNBPF16
neuroblastoma breakpoint family, member 16
neuroblastoma breakpoint family, member 15
Alias_symbol (synonym)MGC8902
Other aliasAB14
AG3
HGNC (Hugo) NBPF15
LocusID (NCBI) 284565
Atlas_Id 56094
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 144421386 and ends at 144459464 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NBPF15 (1q21.2) / ADGRF5 (6p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF15   28791
Cards
Entrez_Gene (NCBI)NBPF15  284565  NBPF member 15
AliasesAB14; AG3; NBPF16
GeneCards (Weizmann)NBPF15
Ensembl hg19 (Hinxton)ENSG00000266338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266338 [Gene_View]  chr1:144421386-144459464 [Contig_View]  NBPF15 [Vega]
ICGC DataPortalENSG00000266338
TCGA cBioPortalNBPF15
AceView (NCBI)NBPF15
Genatlas (Paris)NBPF15
WikiGenes284565
SOURCE (Princeton)NBPF15
Genetics Home Reference (NIH)NBPF15
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF15  -     chr1:144421386-144459464 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF15  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblNBPF15 - 1q21.1 [CytoView hg19]  NBPF15 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBINBPF15 [Mapview hg19]  NBPF15 [Mapview hg38]
OMIM610414   614005   
Gene and transcription
Genbank (Entrez)AF379630 AF420437 AK097180 AK290142 AK290302
RefSeq transcript (Entrez)NM_001102663 NM_001170755 NM_173638
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF15
Cluster EST : UnigeneHs.714127 [ NCBI ]
CGAP (NCI)Hs.714127
Alternative Splicing GalleryENSG00000266338
Gene ExpressionNBPF15 [ NCBI-GEO ]   NBPF15 [ EBI - ARRAY_EXPRESS ]   NBPF15 [ SEEK ]   NBPF15 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284565
GTEX Portal (Tissue expression)NBPF15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N660   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N660  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N660
Splice isoforms : SwissVarQ8N660
PhosPhoSitePlusQ8N660
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF15
DMDM Disease mutations284565
Blocks (Seattle)NBPF15
SuperfamilyQ8N660
Human Protein AtlasENSG00000266338
Peptide AtlasQ8N660
HPRD14710
IPIIPI00657894   IPI01018975   
Protein Interaction databases
DIP (DOE-UCLA)Q8N660
IntAct (EBI)Q8N660
FunCoupENSG00000266338
BioGRIDNBPF15
STRING (EMBL)NBPF15
ZODIACNBPF15
Ontologies - Pathways
QuickGOQ8N660
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF15
Atlas of Cancer Signalling NetworkNBPF15
Wikipedia pathwaysNBPF15
Orthology - Evolution
OrthoDB284565
GeneTree (enSembl)ENSG00000266338
Phylogenetic Trees/Animal Genes : TreeFamNBPF15
HOVERGENQ8N660
HOGENOMQ8N660
Homologs : HomoloGeneNBPF15
Homology/Alignments : Family Browser (UCSC)NBPF15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF15
dbVarNBPF15
ClinVarNBPF15
1000_GenomesNBPF15 
Exome Variant ServerNBPF15
ExAC (Exome Aggregation Consortium)NBPF15 (select the gene name)
Genetic variants : HAPMAP284565
Genomic Variants (DGV)NBPF15 [DGVbeta]
DECIPHERNBPF15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF15 
Mutations
ICGC Data PortalNBPF15 
TCGA Data PortalNBPF15 
Broad Tumor PortalNBPF15
OASIS PortalNBPF15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF15
DgiDB (Drug Gene Interaction Database)NBPF15
DoCM (Curated mutations)NBPF15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF15 (select a term)
intoGenNBPF15
Cancer3DNBPF15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610414    614005   
Orphanet
MedgenNBPF15
Genetic Testing Registry NBPF15
NextProtQ8N660 [Medical]
TSGene284565
GENETestsNBPF15
Target ValidationNBPF15
Huge Navigator NBPF15 [HugePedia]
snp3D : Map Gene to Disease284565
BioCentury BCIQNBPF15
ClinGenNBPF15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284565
Chemical/Pharm GKB GenePA142671274
Clinical trialNBPF15
Miscellaneous
canSAR (ICR)NBPF15 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF15
EVEXNBPF15
GoPubMedNBPF15
iHOPNBPF15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:21:30 CEST 2017

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