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NBPF19 (NBPF member 19)

Identity

Alias_namesneuroblastoma breakpoint family
Other alias-
HGNC (Hugo) NBPF19
LocusID (NCBI) 101060226
Atlas_Id 56449
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149537162 and ends at 149553820 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NBPF19   31999
Cards
Entrez_Gene (NCBI)NBPF19  101060226  NBPF member 19
Aliases
GeneCards (Weizmann)NBPF19
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:149537162-149553820 [Contig_View]  NBPF19 [Vega]
TCGA cBioPortalNBPF19
AceView (NCBI)NBPF19
Genatlas (Paris)NBPF19
WikiGenes101060226
SOURCE (Princeton)NBPF19
Genetics Home Reference (NIH)NBPF19
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF19  -     chr1:149537162-149553820 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF19  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblNBPF19 - 1q21.2 [CytoView hg19]  NBPF19 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBINBPF19 [Mapview hg19]  NBPF19 [Mapview hg38]
OMIM614006   
Gene and transcription
Genbank (Entrez)AF379633 AF379636 AK292666 AK295639 CR936830
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF19
Cluster EST : UnigeneHs.714127 [ NCBI ]
CGAP (NCI)Hs.714127
Gene ExpressionNBPF19 [ NCBI-GEO ]   NBPF19 [ EBI - ARRAY_EXPRESS ]   NBPF19 [ SEEK ]   NBPF19 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101060226
GTEX Portal (Tissue expression)NBPF19
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WUL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WUL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WUL8
Splice isoforms : SwissVarA0A087WUL8
PhosPhoSitePlusA0A087WUL8
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF19
DMDM Disease mutations101060226
Blocks (Seattle)NBPF19
SuperfamilyA0A087WUL8
Peptide AtlasA0A087WUL8
Protein Interaction databases
DIP (DOE-UCLA)A0A087WUL8
IntAct (EBI)A0A087WUL8
BioGRIDNBPF19
STRING (EMBL)NBPF19
ZODIACNBPF19
Ontologies - Pathways
QuickGOA0A087WUL8
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF19
Atlas of Cancer Signalling NetworkNBPF19
Wikipedia pathwaysNBPF19
Orthology - Evolution
OrthoDB101060226
Phylogenetic Trees/Animal Genes : TreeFamNBPF19
HOVERGENA0A087WUL8
HOGENOMA0A087WUL8
Homologs : HomoloGeneNBPF19
Homology/Alignments : Family Browser (UCSC)NBPF19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF19
dbVarNBPF19
ClinVarNBPF19
1000_GenomesNBPF19 
Exome Variant ServerNBPF19
ExAC (Exome Aggregation Consortium)NBPF19 (select the gene name)
Genetic variants : HAPMAP101060226
Genomic Variants (DGV)NBPF19 [DGVbeta]
DECIPHERNBPF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF19 
Mutations
ICGC Data PortalNBPF19 
TCGA Data PortalNBPF19 
Broad Tumor PortalNBPF19
OASIS PortalNBPF19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF19
BioMutasearch NBPF19
DgiDB (Drug Gene Interaction Database)NBPF19
DoCM (Curated mutations)NBPF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF19 (select a term)
intoGenNBPF19
Cancer3DNBPF19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614006   
Orphanet
MedgenNBPF19
Genetic Testing Registry NBPF19
NextProtA0A087WUL8 [Medical]
TSGene101060226
GENETestsNBPF19
Target ValidationNBPF19
Huge Navigator NBPF19 [HugePedia]
snp3D : Map Gene to Disease101060226
BioCentury BCIQNBPF19
ClinGenNBPF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060226
Chemical/Pharm GKB GenePA142671278
Clinical trialNBPF19
Miscellaneous
canSAR (ICR)NBPF19 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF19
EVEXNBPF19
GoPubMedNBPF19
iHOPNBPF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:21:31 CEST 2017

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