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NBPF20 (neuroblastoma breakpoint family member 20)

Identity

Alias_namesneuroblastoma breakpoint family
Other alias-
HGNC (Hugo) NBPF20
LocusID (NCBI) 100288142
Atlas_Id 56190
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 144146811 and ends at 146467744 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF20   32000
Cards
Entrez_Gene (NCBI)NBPF20  100288142  neuroblastoma breakpoint family member 20
Aliases
GeneCards (Weizmann)NBPF20
Ensembl hg19 (Hinxton)ENSG00000162825 [Gene_View]  chr1:144146811-146467744 [Contig_View]  NBPF20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162825 [Gene_View]  chr1:144146811-146467744 [Contig_View]  NBPF20 [Vega]
ICGC DataPortalENSG00000162825
TCGA cBioPortalNBPF20
AceView (NCBI)NBPF20
Genatlas (Paris)NBPF20
WikiGenes100288142
SOURCE (Princeton)NBPF20
Genetics Home Reference (NIH)NBPF20
Genomic and cartography
GoldenPath hg19 (UCSC)NBPF20  -     chr1:144146811-146467744 +  1q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NBPF20  -     1q21.1   [Description]    (hg38-Dec_2013)
EnsemblNBPF20 - 1q21.1 [CytoView hg19]  NBPF20 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBINBPF20 [Mapview hg19]  NBPF20 [Mapview hg38]
OMIM614007   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001278267
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF20
Cluster EST : UnigeneHs.445080 [ NCBI ]
CGAP (NCI)Hs.445080
Alternative Splicing GalleryENSG00000162825
Gene ExpressionNBPF20 [ NCBI-GEO ]   NBPF20 [ EBI - ARRAY_EXPRESS ]   NBPF20 [ SEEK ]   NBPF20 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288142
GTEX Portal (Tissue expression)NBPF20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3BBV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3BBV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3BBV1
Splice isoforms : SwissVarQ3BBV1
PhosPhoSitePlusQ3BBV1
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF20
DMDM Disease mutations100288142
Blocks (Seattle)NBPF20
SuperfamilyQ3BBV1
Human Protein AtlasENSG00000162825
Peptide AtlasQ3BBV1
Protein Interaction databases
DIP (DOE-UCLA)Q3BBV1
IntAct (EBI)Q3BBV1
FunCoupENSG00000162825
BioGRIDNBPF20
STRING (EMBL)NBPF20
ZODIACNBPF20
Ontologies - Pathways
QuickGOQ3BBV1
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF20
Atlas of Cancer Signalling NetworkNBPF20
Wikipedia pathwaysNBPF20
Orthology - Evolution
OrthoDB100288142
GeneTree (enSembl)ENSG00000162825
Phylogenetic Trees/Animal Genes : TreeFamNBPF20
HOVERGENQ3BBV1
HOGENOMQ3BBV1
Homologs : HomoloGeneNBPF20
Homology/Alignments : Family Browser (UCSC)NBPF20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF20
dbVarNBPF20
ClinVarNBPF20
1000_GenomesNBPF20 
Exome Variant ServerNBPF20
ExAC (Exome Aggregation Consortium)NBPF20 (select the gene name)
Genetic variants : HAPMAP100288142
Genomic Variants (DGV)NBPF20 [DGVbeta]
DECIPHER (Syndromes)1:144146811-146467744  ENSG00000162825
CONAN: Copy Number AnalysisNBPF20 
Mutations
ICGC Data PortalNBPF20 
TCGA Data PortalNBPF20 
Broad Tumor PortalNBPF20
OASIS PortalNBPF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNBPF20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNBPF20
BioMutasearch NBPF20
DgiDB (Drug Gene Interaction Database)NBPF20
DoCM (Curated mutations)NBPF20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF20 (select a term)
intoGenNBPF20
Cancer3DNBPF20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614007   
Orphanet
MedgenNBPF20
Genetic Testing Registry NBPF20
NextProtQ3BBV1 [Medical]
TSGene100288142
GENETestsNBPF20
Huge Navigator NBPF20 [HugePedia]
snp3D : Map Gene to Disease100288142
BioCentury BCIQNBPF20
ClinGenNBPF20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288142
Clinical trialNBPF20
Miscellaneous
canSAR (ICR)NBPF20 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF20
EVEXNBPF20
GoPubMedNBPF20
iHOPNBPF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:45 CEST 2017

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