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NBPF3 (neuroblastoma breakpoint family member 3)

Identity

Alias_namesneuroblastoma breakpoint family
Alias_symbol (synonym)AE2
Other alias
HGNC (Hugo) NBPF3
LocusID (NCBI) 84224
Atlas_Id 55962
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 21766583 and ends at 21811393 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NBPF3 (1p36.12) / EPHB2 (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF3   25076
Cards
Entrez_Gene (NCBI)NBPF3  84224  neuroblastoma breakpoint family member 3
AliasesAE2
GeneCards (Weizmann)NBPF3
Ensembl hg19 (Hinxton)ENSG00000142794 [Gene_View]  chr1:21766583-21811393 [Contig_View]  NBPF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142794 [Gene_View]  chr1:21766583-21811393 [Contig_View]  NBPF3 [Vega]
ICGC DataPortalENSG00000142794
TCGA cBioPortalNBPF3
AceView (NCBI)NBPF3
Genatlas (Paris)NBPF3
WikiGenes84224
SOURCE (Princeton)NBPF3
Genetics Home Reference (NIH)NBPF3
Genomic and cartography
GoldenPath hg19 (UCSC)NBPF3  -     chr1:21766583-21811393 +  1p36.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NBPF3  -     1p36.12   [Description]    (hg38-Dec_2013)
EnsemblNBPF3 - 1p36.12 [CytoView hg19]  NBPF3 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBINBPF3 [Mapview hg19]  NBPF3 [Mapview hg38]
OMIM612992   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256416 NM_001256417 NM_001330381 NM_032264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF3
Cluster EST : UnigeneHs.325422 [ NCBI ]
CGAP (NCI)Hs.325422
Alternative Splicing GalleryENSG00000142794
Gene ExpressionNBPF3 [ NCBI-GEO ]   NBPF3 [ EBI - ARRAY_EXPRESS ]   NBPF3 [ SEEK ]   NBPF3 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84224
GTEX Portal (Tissue expression)NBPF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H094   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H094  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H094
Splice isoforms : SwissVarQ9H094
PhosPhoSitePlusQ9H094
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF3
DMDM Disease mutations84224
Blocks (Seattle)NBPF3
SuperfamilyQ9H094
Human Protein AtlasENSG00000142794
Peptide AtlasQ9H094
HPRD10633
IPIIPI00031055   IPI00385628   IPI00848273   IPI01014623   IPI00847488   
Protein Interaction databases
DIP (DOE-UCLA)Q9H094
IntAct (EBI)Q9H094
FunCoupENSG00000142794
BioGRIDNBPF3
STRING (EMBL)NBPF3
ZODIACNBPF3
Ontologies - Pathways
QuickGOQ9H094
Ontology : AmiGOcytoplasm  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIcytoplasm  positive regulation of protein targeting to mitochondrion  
NDEx NetworkNBPF3
Atlas of Cancer Signalling NetworkNBPF3
Wikipedia pathwaysNBPF3
Orthology - Evolution
OrthoDB84224
GeneTree (enSembl)ENSG00000142794
Phylogenetic Trees/Animal Genes : TreeFamNBPF3
HOVERGENQ9H094
HOGENOMQ9H094
Homologs : HomoloGeneNBPF3
Homology/Alignments : Family Browser (UCSC)NBPF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF3
dbVarNBPF3
ClinVarNBPF3
1000_GenomesNBPF3 
Exome Variant ServerNBPF3
ExAC (Exome Aggregation Consortium)NBPF3 (select the gene name)
Genetic variants : HAPMAP84224
Genomic Variants (DGV)NBPF3 [DGVbeta]
DECIPHER (Syndromes)1:21766583-21811393  ENSG00000142794
CONAN: Copy Number AnalysisNBPF3 
Mutations
ICGC Data PortalNBPF3 
TCGA Data PortalNBPF3 
Broad Tumor PortalNBPF3
OASIS PortalNBPF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNBPF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNBPF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF3
DgiDB (Drug Gene Interaction Database)NBPF3
DoCM (Curated mutations)NBPF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF3 (select a term)
intoGenNBPF3
Cancer3DNBPF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612992   
Orphanet
MedgenNBPF3
Genetic Testing Registry NBPF3
NextProtQ9H094 [Medical]
TSGene84224
GENETestsNBPF3
Huge Navigator NBPF3 [HugePedia]
snp3D : Map Gene to Disease84224
BioCentury BCIQNBPF3
ClinGenNBPF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84224
Chemical/Pharm GKB GenePA142671283
Clinical trialNBPF3
Miscellaneous
canSAR (ICR)NBPF3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF3
EVEXNBPF3
GoPubMedNBPF3
iHOPNBPF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:47 CEST 2017

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