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NBPF4 (NBPF member 4)

Identity

Alias_namesneuroblastoma breakpoint family
Alias_symbol (synonym)FLJ32833
Other alias-
HGNC (Hugo) NBPF4
LocusID (NCBI) 148545
Atlas_Id 56395
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108223341 and ends at 108244081 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF4   26550
Cards
Entrez_Gene (NCBI)NBPF4  148545  NBPF member 4
Aliases
GeneCards (Weizmann)NBPF4
Ensembl hg19 (Hinxton)ENSG00000196427 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196427 [Gene_View]  chr1:108223341-108244081 [Contig_View]  NBPF4 [Vega]
ICGC DataPortalENSG00000196427
TCGA cBioPortalNBPF4
AceView (NCBI)NBPF4
Genatlas (Paris)NBPF4
WikiGenes148545
SOURCE (Princeton)NBPF4
Genetics Home Reference (NIH)NBPF4
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF4  -     chr1:108223341-108244081 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF4  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblNBPF4 - 1p13.3 [CytoView hg19]  NBPF4 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBINBPF4 [Mapview hg19]  NBPF4 [Mapview hg38]
OMIM613994   
Gene and transcription
Genbank (Entrez)AK057395 AK302318 AK316438 BC125162 DC402863
RefSeq transcript (Entrez)NM_001143989 NM_152488
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF4
Cluster EST : UnigeneHs.511849 [ NCBI ]
CGAP (NCI)Hs.511849
Alternative Splicing GalleryENSG00000196427
Gene ExpressionNBPF4 [ NCBI-GEO ]   NBPF4 [ EBI - ARRAY_EXPRESS ]   NBPF4 [ SEEK ]   NBPF4 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148545
GTEX Portal (Tissue expression)NBPF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M43
Splice isoforms : SwissVarQ96M43
PhosPhoSitePlusQ96M43
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF4
DMDM Disease mutations148545
Blocks (Seattle)NBPF4
SuperfamilyQ96M43
Human Protein AtlasENSG00000196427
Peptide AtlasQ96M43
HPRD08144
IPIIPI00382642   IPI00930443   IPI01009802   IPI00642511   
Protein Interaction databases
DIP (DOE-UCLA)Q96M43
IntAct (EBI)Q96M43
FunCoupENSG00000196427
BioGRIDNBPF4
STRING (EMBL)NBPF4
ZODIACNBPF4
Ontologies - Pathways
QuickGOQ96M43
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF4
Atlas of Cancer Signalling NetworkNBPF4
Wikipedia pathwaysNBPF4
Orthology - Evolution
OrthoDB148545
GeneTree (enSembl)ENSG00000196427
Phylogenetic Trees/Animal Genes : TreeFamNBPF4
HOVERGENQ96M43
HOGENOMQ96M43
Homologs : HomoloGeneNBPF4
Homology/Alignments : Family Browser (UCSC)NBPF4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF4
dbVarNBPF4
ClinVarNBPF4
1000_GenomesNBPF4 
Exome Variant ServerNBPF4
ExAC (Exome Aggregation Consortium)NBPF4 (select the gene name)
Genetic variants : HAPMAP148545
Genomic Variants (DGV)NBPF4 [DGVbeta]
DECIPHERNBPF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF4 
Mutations
ICGC Data PortalNBPF4 
TCGA Data PortalNBPF4 
Broad Tumor PortalNBPF4
OASIS PortalNBPF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNBPF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNBPF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF4
DgiDB (Drug Gene Interaction Database)NBPF4
DoCM (Curated mutations)NBPF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF4 (select a term)
intoGenNBPF4
Cancer3DNBPF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613994   
Orphanet
MedgenNBPF4
Genetic Testing Registry NBPF4
NextProtQ96M43 [Medical]
TSGene148545
GENETestsNBPF4
Target ValidationNBPF4
Huge Navigator NBPF4 [HugePedia]
snp3D : Map Gene to Disease148545
BioCentury BCIQNBPF4
ClinGenNBPF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148545
Chemical/Pharm GKB GenePA142671284
Clinical trialNBPF4
Miscellaneous
canSAR (ICR)NBPF4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF4
EVEXNBPF4
GoPubMedNBPF4
iHOPNBPF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 25 19:21:33 CEST 2017

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