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NBPF5P (NBPF member 5, pseudogene)

Identity

Alias_namesNBPF5
neuroblastoma breakpoint family, member 5
neuroblastoma breakpoint family, member 5, pseudogene
Other aliasDKFZp434D177-like
HGNC (Hugo) NBPF5P
LocusID (NCBI) 100507044
Atlas_Id 56358
Location 1p13.3  [Link to chromosome band 1p13]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NBPF5P   24491
Cards
Entrez_Gene (NCBI)NBPF5P  100507044  NBPF member 5, pseudogene
AliasesDKFZp434D177-like; NBPF5
GeneCards (Weizmann)NBPF5P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  NBPF5P [Vega]
TCGA cBioPortalNBPF5P
AceView (NCBI)NBPF5P
Genatlas (Paris)NBPF5P
WikiGenes100507044
SOURCE (Princeton)NBPF5P
Genetics Home Reference (NIH)NBPF5P
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF5P  -  
GoldenPath hg19 (UCSC)NBPF5P  -  
EnsemblNBPF5P - [CytoView hg19]  NBPF5P - [CytoView hg38]
Mapping of homologs : NCBINBPF5P [Mapview hg19]  NBPF5P [Mapview hg38]
OMIM613995   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF5P
Gene ExpressionNBPF5P [ NCBI-GEO ]   NBPF5P [ EBI - ARRAY_EXPRESS ]   NBPF5P [ SEEK ]   NBPF5P [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF5P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507044
GTEX Portal (Tissue expression)NBPF5P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XG9
Splice isoforms : SwissVarQ86XG9
PhosPhoSitePlusQ86XG9
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF5P
DMDM Disease mutations100507044
Blocks (Seattle)NBPF5P
SuperfamilyQ86XG9
Peptide AtlasQ86XG9
IPIIPI00374070   
Protein Interaction databases
DIP (DOE-UCLA)Q86XG9
IntAct (EBI)Q86XG9
BioGRIDNBPF5P
STRING (EMBL)NBPF5P
ZODIACNBPF5P
Ontologies - Pathways
QuickGOQ86XG9
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF5P
Atlas of Cancer Signalling NetworkNBPF5P
Wikipedia pathwaysNBPF5P
Orthology - Evolution
OrthoDB100507044
Phylogenetic Trees/Animal Genes : TreeFamNBPF5P
HOVERGENQ86XG9
HOGENOMQ86XG9
Homologs : HomoloGeneNBPF5P
Homology/Alignments : Family Browser (UCSC)NBPF5P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF5P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF5P
dbVarNBPF5P
ClinVarNBPF5P
1000_GenomesNBPF5P 
Exome Variant ServerNBPF5P
ExAC (Exome Aggregation Consortium)NBPF5P (select the gene name)
Genetic variants : HAPMAP100507044
Genomic Variants (DGV)NBPF5P [DGVbeta]
DECIPHERNBPF5P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF5P 
Mutations
ICGC Data PortalNBPF5P 
TCGA Data PortalNBPF5P 
Broad Tumor PortalNBPF5P
OASIS PortalNBPF5P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF5P
BioMutasearch NBPF5P
DgiDB (Drug Gene Interaction Database)NBPF5P
DoCM (Curated mutations)NBPF5P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF5P (select a term)
intoGenNBPF5P
Cancer3DNBPF5P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613995   
Orphanet
MedgenNBPF5P
Genetic Testing Registry NBPF5P
NextProtQ86XG9 [Medical]
TSGene100507044
GENETestsNBPF5P
Target ValidationNBPF5P
Huge Navigator NBPF5P [HugePedia]
snp3D : Map Gene to Disease100507044
BioCentury BCIQNBPF5P
ClinGenNBPF5P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507044
Chemical/Pharm GKB GenePA142671285
Clinical trialNBPF5P
Miscellaneous
canSAR (ICR)NBPF5P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF5P
EVEXNBPF5P
GoPubMedNBPF5P
iHOPNBPF5P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:46:15 CEST 2017

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