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NBPF6 (NBPF member 6)

Identity

Alias_namesneuroblastoma breakpoint family
Other alias-
HGNC (Hugo) NBPF6
LocusID (NCBI) 653149
Atlas_Id 54490
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108450282 and ends at 108470638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC25A24 (1p13.3) / NBPF6 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF6   31988
Cards
Entrez_Gene (NCBI)NBPF6  653149  NBPF member 6
Aliases
GeneCards (Weizmann)NBPF6
Ensembl hg19 (Hinxton)ENSG00000186086 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186086 [Gene_View]  chr1:108450282-108470638 [Contig_View]  NBPF6 [Vega]
ICGC DataPortalENSG00000186086
TCGA cBioPortalNBPF6
AceView (NCBI)NBPF6
Genatlas (Paris)NBPF6
WikiGenes653149
SOURCE (Princeton)NBPF6
Genetics Home Reference (NIH)NBPF6
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF6  -     chr1:108450282-108470638 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF6  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblNBPF6 - 1p13.3 [CytoView hg19]  NBPF6 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBINBPF6 [Mapview hg19]  NBPF6 [Mapview hg38]
OMIM613996   
Gene and transcription
Genbank (Entrez)BC125161
RefSeq transcript (Entrez)NM_001143987 NM_001143988
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF6
Cluster EST : UnigeneHs.712226 [ NCBI ]
CGAP (NCI)Hs.712226
Alternative Splicing GalleryENSG00000186086
Gene ExpressionNBPF6 [ NCBI-GEO ]   NBPF6 [ EBI - ARRAY_EXPRESS ]   NBPF6 [ SEEK ]   NBPF6 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653149
GTEX Portal (Tissue expression)NBPF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWK0
Splice isoforms : SwissVarQ5VWK0
PhosPhoSitePlusQ5VWK0
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF6
DMDM Disease mutations653149
Blocks (Seattle)NBPF6
SuperfamilyQ5VWK0
Human Protein AtlasENSG00000186086
Peptide AtlasQ5VWK0
IPIIPI00645529   IPI00854604   IPI00845450   IPI00976462   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWK0
IntAct (EBI)Q5VWK0
FunCoupENSG00000186086
BioGRIDNBPF6
STRING (EMBL)NBPF6
ZODIACNBPF6
Ontologies - Pathways
QuickGOQ5VWK0
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF6
Atlas of Cancer Signalling NetworkNBPF6
Wikipedia pathwaysNBPF6
Orthology - Evolution
OrthoDB653149
GeneTree (enSembl)ENSG00000186086
Phylogenetic Trees/Animal Genes : TreeFamNBPF6
HOVERGENQ5VWK0
HOGENOMQ5VWK0
Homologs : HomoloGeneNBPF6
Homology/Alignments : Family Browser (UCSC)NBPF6
Gene fusions - Rearrangements
Fusion : MitelmanSLC25A24/NBPF6 [1p13.3/1p13.3]  [t(1;1)(p13;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF6
dbVarNBPF6
ClinVarNBPF6
1000_GenomesNBPF6 
Exome Variant ServerNBPF6
ExAC (Exome Aggregation Consortium)NBPF6 (select the gene name)
Genetic variants : HAPMAP653149
Genomic Variants (DGV)NBPF6 [DGVbeta]
DECIPHERNBPF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF6 
Mutations
ICGC Data PortalNBPF6 
TCGA Data PortalNBPF6 
Broad Tumor PortalNBPF6
OASIS PortalNBPF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNBPF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNBPF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF6
DgiDB (Drug Gene Interaction Database)NBPF6
DoCM (Curated mutations)NBPF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF6 (select a term)
intoGenNBPF6
Cancer3DNBPF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613996   
Orphanet
MedgenNBPF6
Genetic Testing Registry NBPF6
NextProtQ5VWK0 [Medical]
TSGene653149
GENETestsNBPF6
Target ValidationNBPF6
Huge Navigator NBPF6 [HugePedia]
snp3D : Map Gene to Disease653149
BioCentury BCIQNBPF6
ClinGenNBPF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653149
Chemical/Pharm GKB GenePA142671286
Clinical trialNBPF6
Miscellaneous
canSAR (ICR)NBPF6 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF6
EVEXNBPF6
GoPubMedNBPF6
iHOPNBPF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:45 CEST 2017

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