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NBPF7 (NBPF member 7)

Identity

Alias_namesneuroblastoma breakpoint family
Other alias-
HGNC (Hugo) NBPF7
LocusID (NCBI) 343505
Atlas_Id 56166
Location 1p12  [Link to chromosome band 1p12]
Location_base_pair Starts at 119834765 and ends at 119844880 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF7   31989
Cards
Entrez_Gene (NCBI)NBPF7  343505  NBPF member 7
Aliases
GeneCards (Weizmann)NBPF7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:119834765-119844880 [Contig_View]  NBPF7 [Vega]
TCGA cBioPortalNBPF7
AceView (NCBI)NBPF7
Genatlas (Paris)NBPF7
WikiGenes343505
SOURCE (Princeton)NBPF7
Genetics Home Reference (NIH)NBPF7
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF7  -     chr1:119834765-119844880 -  1p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF7  -     1p12   [Description]    (hg19-Feb_2009)
EnsemblNBPF7 - 1p12 [CytoView hg19]  NBPF7 - 1p12 [CytoView hg38]
Mapping of homologs : NCBINBPF7 [Mapview hg19]  NBPF7 [Mapview hg38]
OMIM613997   
Gene and transcription
Genbank (Entrez)BC156110 BC156966
RefSeq transcript (Entrez)NM_001047980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF7
Gene ExpressionNBPF7 [ NCBI-GEO ]   NBPF7 [ EBI - ARRAY_EXPRESS ]   NBPF7 [ SEEK ]   NBPF7 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343505
GTEX Portal (Tissue expression)NBPF7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C2Y1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C2Y1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C2Y1
Splice isoforms : SwissVarP0C2Y1
PhosPhoSitePlusP0C2Y1
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF7
DMDM Disease mutations343505
Blocks (Seattle)NBPF7
SuperfamilyP0C2Y1
Peptide AtlasP0C2Y1
IPIIPI00787308   
Protein Interaction databases
DIP (DOE-UCLA)P0C2Y1
IntAct (EBI)P0C2Y1
BioGRIDNBPF7
STRING (EMBL)NBPF7
ZODIACNBPF7
Ontologies - Pathways
QuickGOP0C2Y1
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF7
Atlas of Cancer Signalling NetworkNBPF7
Wikipedia pathwaysNBPF7
Orthology - Evolution
OrthoDB343505
Phylogenetic Trees/Animal Genes : TreeFamNBPF7
HOVERGENP0C2Y1
HOGENOMP0C2Y1
Homologs : HomoloGeneNBPF7
Homology/Alignments : Family Browser (UCSC)NBPF7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF7
dbVarNBPF7
ClinVarNBPF7
1000_GenomesNBPF7 
Exome Variant ServerNBPF7
ExAC (Exome Aggregation Consortium)NBPF7 (select the gene name)
Genetic variants : HAPMAP343505
Genomic Variants (DGV)NBPF7 [DGVbeta]
DECIPHERNBPF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF7 
Mutations
ICGC Data PortalNBPF7 
TCGA Data PortalNBPF7 
Broad Tumor PortalNBPF7
OASIS PortalNBPF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNBPF7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNBPF7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NBPF7
DgiDB (Drug Gene Interaction Database)NBPF7
DoCM (Curated mutations)NBPF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF7 (select a term)
intoGenNBPF7
Cancer3DNBPF7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613997   
Orphanet
MedgenNBPF7
Genetic Testing Registry NBPF7
NextProtP0C2Y1 [Medical]
TSGene343505
GENETestsNBPF7
Target ValidationNBPF7
Huge Navigator NBPF7 [HugePedia]
snp3D : Map Gene to Disease343505
BioCentury BCIQNBPF7
ClinGenNBPF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343505
Chemical/Pharm GKB GenePA142671287
Clinical trialNBPF7
Miscellaneous
canSAR (ICR)NBPF7 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF7
EVEXNBPF7
GoPubMedNBPF7
iHOPNBPF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:45 CEST 2017

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