Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NBPF9 (NBPF member 9)

Identity

Alias_namesneuroblastoma breakpoint family
Alias_symbol (synonym)AE01
Other alias
HGNC (Hugo) NBPF9
LocusID (NCBI) 400818
Atlas_Id 56241
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149054033 and ends at 149082311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HDAC4 (2q37.3) / NBPF9 (1q21.1)NBPF9 (1q21.1) / DPYD (1p21.3)NBPF9 (1q21.1) / HMG20B (19p13.3)
NBPF9 (1q21.1) / INTS3 (1q21.3)NBPF9 (1q21.1) / NBPF11 (1q21.1)NBPF9 (1q21.1) / NBPF14 (1q21.2)
NBPF9 (1q21.1) / NBPF9 (1q21.1)NBPF9 (1q21.1) / ST7 (7q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NBPF9   31991
Cards
Entrez_Gene (NCBI)NBPF9  400818  NBPF member 9
AliasesAE01
GeneCards (Weizmann)NBPF9
Ensembl hg19 (Hinxton)ENSG00000269713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269713 [Gene_View]  chr1:149054033-149082311 [Contig_View]  NBPF9 [Vega]
ICGC DataPortalENSG00000269713
TCGA cBioPortalNBPF9
AceView (NCBI)NBPF9
Genatlas (Paris)NBPF9
WikiGenes400818
SOURCE (Princeton)NBPF9
Genetics Home Reference (NIH)NBPF9
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF9  -     chr1:149054033-149082311 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF9  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblNBPF9 - 1q21.2 [CytoView hg19]  NBPF9 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBINBPF9 [Mapview hg19]  NBPF9 [Mapview hg38]
OMIM613999   
Gene and transcription
Genbank (Entrez)AH012397 AK095030 AK294414 AY894574 BC027348
RefSeq transcript (Entrez)NM_001037675 NM_001277444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF9
Cluster EST : UnigeneHs.714127 [ NCBI ]
CGAP (NCI)Hs.714127
Alternative Splicing GalleryENSG00000269713
Gene ExpressionNBPF9 [ NCBI-GEO ]   NBPF9 [ EBI - ARRAY_EXPRESS ]   NBPF9 [ SEEK ]   NBPF9 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400818
GTEX Portal (Tissue expression)NBPF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3BBW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3BBW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3BBW0
Splice isoforms : SwissVarQ3BBW0
PhosPhoSitePlusQ3BBW0
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)NBPF_dom   
Domain families : Pfam (Sanger)DUF1220 (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF9
DMDM Disease mutations400818
Blocks (Seattle)NBPF9
SuperfamilyQ3BBW0
Human Protein AtlasENSG00000269713
Peptide AtlasQ3BBW0
Protein Interaction databases
DIP (DOE-UCLA)Q3BBW0
IntAct (EBI)Q3BBW0
FunCoupENSG00000269713
BioGRIDNBPF9
STRING (EMBL)NBPF9
ZODIACNBPF9
Ontologies - Pathways
QuickGOQ3BBW0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNBPF9
Atlas of Cancer Signalling NetworkNBPF9
Wikipedia pathwaysNBPF9
Orthology - Evolution
OrthoDB400818
GeneTree (enSembl)ENSG00000269713
Phylogenetic Trees/Animal Genes : TreeFamNBPF9
HOVERGENQ3BBW0
HOGENOMQ3BBW0
Homologs : HomoloGeneNBPF9
Homology/Alignments : Family Browser (UCSC)NBPF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF9
dbVarNBPF9
ClinVarNBPF9
1000_GenomesNBPF9 
Exome Variant ServerNBPF9
ExAC (Exome Aggregation Consortium)NBPF9 (select the gene name)
Genetic variants : HAPMAP400818
Genomic Variants (DGV)NBPF9 [DGVbeta]
DECIPHERNBPF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF9 
Mutations
ICGC Data PortalNBPF9 
TCGA Data PortalNBPF9 
Broad Tumor PortalNBPF9
OASIS PortalNBPF9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF9
BioMutasearch NBPF9
DgiDB (Drug Gene Interaction Database)NBPF9
DoCM (Curated mutations)NBPF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF9 (select a term)
intoGenNBPF9
Cancer3DNBPF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613999   
Orphanet
MedgenNBPF9
Genetic Testing Registry NBPF9
NextProtQ3BBW0 [Medical]
TSGene400818
GENETestsNBPF9
Target ValidationNBPF9
Huge Navigator NBPF9 [HugePedia]
snp3D : Map Gene to Disease400818
BioCentury BCIQNBPF9
ClinGenNBPF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400818
Chemical/Pharm GKB GenePA142671289
Clinical trialNBPF9
Miscellaneous
canSAR (ICR)NBPF9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF9
EVEXNBPF9
GoPubMedNBPF9
iHOPNBPF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:21:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.