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NCALD (neurocalcin delta)

Identity

Alias (NCBI)-
HGNC (Hugo) NCALD
LocusID (NCBI) 83988
Atlas_Id 70725
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 101686542 and ends at 101790969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC103 (17q21.31) / NCALD (8q22.3)CNP (17q21.2) / NCALD (8q22.3)GRN (17q21.31) / NCALD (8q22.3)
GSK3B (3q13.33) / NCALD (8q22.3)LRRC75A-AS1 (17p11.2) / NCALD (8q22.3)NCALD (8q22.3) / LAPTM4B (8q22.1)
NCALD (8q22.3) / NSMCE2 (8q24.13)NCALD (8q22.3) / SLC5A11 (16p12.1)NCOA2 (8q13.3) / NCALD (8q22.3)
PLD3 (19q13.2) / NCALD (8q22.3)RPL8 (8q24.3) / NCALD (8q22.3)SPARCL1 (4q22.1) / NCALD (8q22.3)
TPT1 (13q14.13) / NCALD (8q22.3)TPT1 NCALDNCOA2 NCALD
GRN NCALDPLD3 NCALDRPL8 NCALD
NCALD SLC5A11NCALD LAPTM4BNCALD NSMCE2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)NCALD   7655
Cards
Entrez_Gene (NCBI)NCALD    neurocalcin delta
Aliases
GeneCards (Weizmann)NCALD
Ensembl hg19 (Hinxton)ENSG00000104490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104490 [Gene_View]  ENSG00000104490 [Sequence]  chr8:101686542-101790969 [Contig_View]  NCALD [Vega]
ICGC DataPortalENSG00000104490
TCGA cBioPortalNCALD
AceView (NCBI)NCALD
Genatlas (Paris)NCALD
SOURCE (Princeton)NCALD
Genetics Home Reference (NIH)NCALD
Genomic and cartography
GoldenPath hg38 (UCSC)NCALD  -     chr8:101686542-101790969 -  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCALD  -     8q22.3   [Description]    (hg19-Feb_2009)
GoldenPathNCALD - 8q22.3 [CytoView hg19]  NCALD - 8q22.3 [CytoView hg38]
ImmunoBaseENSG00000104490
genome Data Viewer NCBINCALD [Mapview hg19]  
OMIM606722   
Gene and transcription
Genbank (Entrez)AB209015 AF052142 AF251061 AK055073 AK055097
RefSeq transcript (Entrez)NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629 NM_001040630 NM_032041
Consensus coding sequences : CCDS (NCBI)NCALD
Alternative Splicing GalleryENSG00000104490
Gene ExpressionNCALD [ NCBI-GEO ]   NCALD [ EBI - ARRAY_EXPRESS ]   NCALD [ SEEK ]   NCALD [ MEM ]
Gene Expression Viewer (FireBrowse)NCALD [ Firebrowse - Broad ]
GenevisibleExpression of NCALD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83988
GTEX Portal (Tissue expression)NCALD
Human Protein AtlasENSG00000104490-NCALD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61601   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61601  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61601
PhosPhoSitePlusP61601
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)NCALD
SuperfamilyP61601
AlphaFold pdb e-kbP61601   
Human Protein Atlas [tissue]ENSG00000104490-NCALD [tissue]
HPRD09466
Protein Interaction databases
DIP (DOE-UCLA)P61601
IntAct (EBI)P61601
BioGRIDNCALD
STRING (EMBL)NCALD
ZODIACNCALD
Ontologies - Pathways
QuickGOP61601
Ontology : AmiGOregulation of systemic arterial blood pressure  actin binding  calcium ion binding  protein binding  cytosol  cytosol  tubulin binding  vesicle-mediated transport  calcium-mediated signaling  clathrin coat of trans-Golgi network vesicle  clathrin binding  alpha-tubulin binding  
Ontology : EGO-EBIregulation of systemic arterial blood pressure  actin binding  calcium ion binding  protein binding  cytosol  cytosol  tubulin binding  vesicle-mediated transport  calcium-mediated signaling  clathrin coat of trans-Golgi network vesicle  clathrin binding  alpha-tubulin binding  
NDEx NetworkNCALD
Atlas of Cancer Signalling NetworkNCALD
Wikipedia pathwaysNCALD
Orthology - Evolution
OrthoDB83988
GeneTree (enSembl)ENSG00000104490
Phylogenetic Trees/Animal Genes : TreeFamNCALD
Homologs : HomoloGeneNCALD
Homology/Alignments : Family Browser (UCSC)NCALD
Gene fusions - Rearrangements
Fusion PortalTPT1 NCALD
Fusion PortalNCOA2 NCALD
Fusion PortalGRN NCALD
Fusion PortalPLD3 NCALD
Fusion PortalRPL8 NCALD
Fusion PortalNCALD SLC5A11
Fusion PortalNCALD LAPTM4B
Fusion PortalNCALD NSMCE2
Fusion : QuiverNCALD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCALD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCALD
dbVarNCALD
ClinVarNCALD
MonarchNCALD
1000_GenomesNCALD 
Exome Variant ServerNCALD
GNOMAD BrowserENSG00000104490
Varsome BrowserNCALD
Genomic Variants (DGV)NCALD [DGVbeta]
DECIPHERNCALD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCALD 
Mutations
ICGC Data PortalNCALD 
TCGA Data PortalNCALD 
Broad Tumor PortalNCALD
OASIS PortalNCALD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCALD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNCALD
Mutations and Diseases : HGMDNCALD
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch NCALD
DgiDB (Drug Gene Interaction Database)NCALD
DoCM (Curated mutations)NCALD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCALD (select a term)
Cancer3DNCALD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606722   
Orphanet
DisGeNETNCALD
MedgenNCALD
Genetic Testing Registry NCALD
NextProtP61601 [Medical]
GENETestsNCALD
Target ValidationNCALD
Huge Navigator NCALD [HugePedia]
ClinGenNCALD
Clinical trials, drugs, therapy
MyCancerGenomeNCALD
Protein Interactions : CTDNCALD
Pharm GKB GenePA31458
PharosP61601
Clinical trialNCALD
Miscellaneous
canSAR (ICR)NCALD
HarmonizomeNCALD
DataMed IndexNCALD
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNCALD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 23:20:12 CEST 2021

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