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NCALD (neurocalcin delta)

Identity

Other alias-
HGNC (Hugo) NCALD
LocusID (NCBI) 83988
Atlas_Id 70725
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 101686542 and ends at 102124334 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC103 (17q21.31) / NCALD (8q22.3)CNP (17q21.2) / NCALD (8q22.3)GRN (17q21.31) / NCALD (8q22.3)
GSK3B (3q13.33) / NCALD (8q22.3)LRRC75A-AS1 (17p11.2) / NCALD (8q22.3)NCALD (8q22.3) / LAPTM4B (8q22.1)
NCALD (8q22.3) / NSMCE2 (8q24.13)NCALD (8q22.3) / SLC5A11 (16p12.1)NCOA2 (8q13.3) / NCALD (8q22.3)
PLD3 (19q13.2) / NCALD (8q22.3)RPL8 (8q24.3) / NCALD (8q22.3)SPARCL1 (4q22.1) / NCALD (8q22.3)
TPT1 (13q14.13) / NCALD (8q22.3)TPT1 NCALDNCOA2 NCALD
GRN NCALDPLD3 NCALDRPL8 NCALD
NCALD SLC5A11NCALD LAPTM4BNCALD NSMCE2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCALD   7655
Cards
Entrez_Gene (NCBI)NCALD  83988  neurocalcin delta
Aliases
GeneCards (Weizmann)NCALD
Ensembl hg19 (Hinxton)ENSG00000104490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104490 [Gene_View]  chr8:101686542-102124334 [Contig_View]  NCALD [Vega]
ICGC DataPortalENSG00000104490
TCGA cBioPortalNCALD
AceView (NCBI)NCALD
Genatlas (Paris)NCALD
WikiGenes83988
SOURCE (Princeton)NCALD
Genetics Home Reference (NIH)NCALD
Genomic and cartography
GoldenPath hg38 (UCSC)NCALD  -     chr8:101686542-102124334 -  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCALD  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblNCALD - 8q22.3 [CytoView hg19]  NCALD - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBINCALD [Mapview hg19]  NCALD [Mapview hg38]
OMIM606722   
Gene and transcription
Genbank (Entrez)AB209015 AF052142 AF251061 AK055073 AK055097
RefSeq transcript (Entrez)NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629 NM_001040630 NM_032041
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCALD
Cluster EST : UnigeneHs.492427 [ NCBI ]
CGAP (NCI)Hs.492427
Alternative Splicing GalleryENSG00000104490
Gene ExpressionNCALD [ NCBI-GEO ]   NCALD [ EBI - ARRAY_EXPRESS ]   NCALD [ SEEK ]   NCALD [ MEM ]
Gene Expression Viewer (FireBrowse)NCALD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83988
GTEX Portal (Tissue expression)NCALD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61601   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61601  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61601
Splice isoforms : SwissVarP61601
PhosPhoSitePlusP61601
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)NCALD
DMDM Disease mutations83988
Blocks (Seattle)NCALD
SuperfamilyP61601
Human Protein AtlasENSG00000104490
Peptide AtlasP61601
HPRD09466
IPIIPI00395510   IPI00555920   IPI00974524   IPI00984934   IPI00977917   IPI00983940   IPI00977821   IPI00981966   IPI00976188   IPI00981601   IPI00977215   IPI00980274   IPI00980991   IPI00975511   IPI00976193   IPI00984958   IPI00982684   IPI00984369   IPI00979672   
Protein Interaction databases
DIP (DOE-UCLA)P61601
IntAct (EBI)P61601
FunCoupENSG00000104490
BioGRIDNCALD
STRING (EMBL)NCALD
ZODIACNCALD
Ontologies - Pathways
QuickGOP61601
Ontology : AmiGOregulation of systemic arterial blood pressure  actin binding  calcium ion binding  protein binding  intracellular  cytosol  cytosol  ligand-gated ion channel activity  tubulin binding  vesicle-mediated transport  calcium-mediated signaling  clathrin coat of trans-Golgi network vesicle  clathrin binding  ion transmembrane transport  alpha-tubulin binding  extracellular exosome  
Ontology : EGO-EBIregulation of systemic arterial blood pressure  actin binding  calcium ion binding  protein binding  intracellular  cytosol  cytosol  ligand-gated ion channel activity  tubulin binding  vesicle-mediated transport  calcium-mediated signaling  clathrin coat of trans-Golgi network vesicle  clathrin binding  ion transmembrane transport  alpha-tubulin binding  extracellular exosome  
NDEx NetworkNCALD
Atlas of Cancer Signalling NetworkNCALD
Wikipedia pathwaysNCALD
Orthology - Evolution
OrthoDB83988
GeneTree (enSembl)ENSG00000104490
Phylogenetic Trees/Animal Genes : TreeFamNCALD
HOVERGENP61601
HOGENOMP61601
Homologs : HomoloGeneNCALD
Homology/Alignments : Family Browser (UCSC)NCALD
Gene fusions - Rearrangements
Fusion: TCGATPT1 NCALD
Fusion: TCGANCOA2 NCALD
Fusion: TCGAGRN NCALD
Fusion: TCGAPLD3 NCALD
Fusion: TCGARPL8 NCALD
Fusion: TCGANCALD SLC5A11
Fusion: TCGANCALD LAPTM4B
Fusion: TCGANCALD NSMCE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCALD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCALD
dbVarNCALD
ClinVarNCALD
1000_GenomesNCALD 
Exome Variant ServerNCALD
ExAC (Exome Aggregation Consortium)NCALD (select the gene name)
Genetic variants : HAPMAP83988
Genomic Variants (DGV)NCALD [DGVbeta]
DECIPHERNCALD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCALD 
Mutations
ICGC Data PortalNCALD 
TCGA Data PortalNCALD 
Broad Tumor PortalNCALD
OASIS PortalNCALD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCALD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCALD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCALD
DgiDB (Drug Gene Interaction Database)NCALD
DoCM (Curated mutations)NCALD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCALD (select a term)
intoGenNCALD
Cancer3DNCALD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606722   
Orphanet
MedgenNCALD
Genetic Testing Registry NCALD
NextProtP61601 [Medical]
TSGene83988
GENETestsNCALD
Target ValidationNCALD
Huge Navigator NCALD [HugePedia]
snp3D : Map Gene to Disease83988
BioCentury BCIQNCALD
ClinGenNCALD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83988
Chemical/Pharm GKB GenePA31458
Clinical trialNCALD
Miscellaneous
canSAR (ICR)NCALD (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCALD
EVEXNCALD
GoPubMedNCALD
iHOPNCALD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:31:47 CEST 2017

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