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NCAM1 (neural cell adhesion molecule 1)

Identity

Alias (NCBI)CD56
MSK39
NCAM
HGNC (Hugo) NCAM1
HGNC Alias symbNCAM
CD56
LocusID (NCBI) 4684
Atlas_Id 41503
Location 11q23.2  [Link to chromosome band 11q23]
Location_base_pair Starts at 112961420 and ends at 113278436 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C2CD3 (11q13.4) / NCAM1 (11q23.2)CDK5RAP2 (9q33.2) / NCAM1 (11q23.2)MRPL9 (1q21.3) / NCAM1 (11q23.2)
NCAM1 (11q23.2) / CALM3 (19q13.32)NCAM1 (11q23.2) / CDK5RAP2 (9q33.2)NCAM1 (11q23.2) / NCAM1 (11q23.2)
NCAM1 (11q23.2) / RABEP1 (17p13.2)NLGN1 (3q26.31) / NCAM1 (11q23.2)POSTN (13q13.3) / NCAM1 (11q23.2)
C2CD3 11q13.4 / NCAM1 11q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  dic(9;17)(p13;q11) PAX5/TAOK1
Hepatosplenic T-cell lymphoma (HSTCL)
inv(16)(p13q24) CBFA2T3/GLIS2
Nasal T cell lymphoma (published in 2008)


External links

Nomenclature
HGNC (Hugo)NCAM1   7656
Cards
Entrez_Gene (NCBI)NCAM1    neural cell adhesion molecule 1
AliasesCD56; MSK39; NCAM
GeneCards (Weizmann)NCAM1
Ensembl hg19 (Hinxton)ENSG00000149294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149294 [Gene_View]  ENSG00000149294 [Sequence]  chr11:112961420-113278436 [Contig_View]  NCAM1 [Vega]
ICGC DataPortalENSG00000149294
TCGA cBioPortalNCAM1
AceView (NCBI)NCAM1
Genatlas (Paris)NCAM1
SOURCE (Princeton)NCAM1
Genetics Home Reference (NIH)NCAM1
Genomic and cartography
GoldenPath hg38 (UCSC)NCAM1  -     chr11:112961420-113278436 +  11q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCAM1  -     11q23.2   [Description]    (hg19-Feb_2009)
GoldenPathNCAM1 - 11q23.2 [CytoView hg19]  NCAM1 - 11q23.2 [CytoView hg38]
ImmunoBaseENSG00000149294
Genome Data Viewer NCBINCAM1 [Mapview hg19]  
OMIM116930   
Gene and transcription
Genbank (Entrez)AA029449 AB209443 AF005070 AK054570 AK054929
RefSeq transcript (Entrez)NM_000615 NM_001076682 NM_001242607 NM_001242608 NM_001386289 NM_001386290 NM_001386291 NM_001386292 NM_181351
Consensus coding sequences : CCDS (NCBI)NCAM1
Gene ExpressionNCAM1 [ NCBI-GEO ]   NCAM1 [ EBI - ARRAY_EXPRESS ]   NCAM1 [ SEEK ]   NCAM1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCAM1 [ Firebrowse - Broad ]
GenevisibleExpression of NCAM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4684
GTEX Portal (Tissue expression)NCAM1
Human Protein AtlasENSG00000149294-NCAM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NCAM1
Human Protein Atlas [tissue]ENSG00000149294-NCAM1 [tissue]
HPRD00301
Protein Interaction databases
BioGRIDNCAM1
STRING (EMBL)NCAM1
ZODIACNCAM1
Ontologies - Pathways
Litterature
PubMed353 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNCAM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:22:13 CEST 2021

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