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NCAPD2 (non-SMC condensin I complex subunit D2)

Identity

Alias_namesnon-SMC condensin I complex
Alias_symbol (synonym)CNAP1
hCAP-D2
CAP-D2
KIAA0159
Other alias
HGNC (Hugo) NCAPD2
LocusID (NCBI) 9918
Atlas_Id 54491
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6494132 and ends at 6531966 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCAPD2 (12p13.31) / MRPL51 (12p13.31)NCAPD2 (12p13.31) / NPSR1-AS1 (7p14.3)NCAPD2 (12p13.31) / PRPF3 (1q21.2)
NCAPD2 (12p13.31) / VWF (12p13.31)NCAPD2 12p13.31 / VWF 12p13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCAPD2   24305
Cards
Entrez_Gene (NCBI)NCAPD2  9918  non-SMC condensin I complex subunit D2
AliasesCAP-D2; CNAP1; hCAP-D2
GeneCards (Weizmann)NCAPD2
Ensembl hg19 (Hinxton)ENSG00000010292 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010292 [Gene_View]  chr12:6494132-6531966 [Contig_View]  NCAPD2 [Vega]
ICGC DataPortalENSG00000010292
TCGA cBioPortalNCAPD2
AceView (NCBI)NCAPD2
Genatlas (Paris)NCAPD2
WikiGenes9918
SOURCE (Princeton)NCAPD2
Genetics Home Reference (NIH)NCAPD2
Genomic and cartography
GoldenPath hg38 (UCSC)NCAPD2  -     chr12:6494132-6531966 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCAPD2  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblNCAPD2 - 12p13.31 [CytoView hg19]  NCAPD2 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBINCAPD2 [Mapview hg19]  NCAPD2 [Mapview hg38]
OMIM615638   
Gene and transcription
Genbank (Entrez)AK022511 AK125155 AK128354 AK303310 AL548223
RefSeq transcript (Entrez)NM_014865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCAPD2
Cluster EST : UnigeneHs.5719 [ NCBI ]
CGAP (NCI)Hs.5719
Alternative Splicing GalleryENSG00000010292
Gene ExpressionNCAPD2 [ NCBI-GEO ]   NCAPD2 [ EBI - ARRAY_EXPRESS ]   NCAPD2 [ SEEK ]   NCAPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)NCAPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9918
GTEX Portal (Tissue expression)NCAPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15021
Splice isoforms : SwissVarQ15021
PhosPhoSitePlusQ15021
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CND1/NCAPD3    Cnd1_C    Condensin_cplx_su1    Condensin_cplx_su1_N   
Domain families : Pfam (Sanger)Cnd1 (PF12717)    Cnd1_N (PF12922)   
Domain families : Pfam (NCBI)pfam12717    pfam12922   
Conserved Domain (NCBI)NCAPD2
DMDM Disease mutations9918
Blocks (Seattle)NCAPD2
SuperfamilyQ15021
Human Protein AtlasENSG00000010292
Peptide AtlasQ15021
HPRD06472
IPIIPI00299524   IPI00944455   IPI01014221   IPI00445741   IPI01010777   
Protein Interaction databases
DIP (DOE-UCLA)Q15021
IntAct (EBI)Q15021
FunCoupENSG00000010292
BioGRIDNCAPD2
STRING (EMBL)NCAPD2
ZODIACNCAPD2
Ontologies - Pathways
QuickGOQ15021
Ontology : AmiGOnuclear chromosome  condensed chromosome, centromeric region  condensed chromosome  condensin complex  condensin core heterodimer  nuclear condensin complex  chromatin binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  cytosol  mitotic chromosome condensation  mitotic chromosome condensation  meiotic chromosome condensation  membrane  histone binding  histone binding  cell division  chromosome separation  
Ontology : EGO-EBInuclear chromosome  condensed chromosome, centromeric region  condensed chromosome  condensin complex  condensin core heterodimer  nuclear condensin complex  chromatin binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  cytosol  mitotic chromosome condensation  mitotic chromosome condensation  meiotic chromosome condensation  membrane  histone binding  histone binding  cell division  chromosome separation  
Pathways : BIOCARTAAKAP95 role in mitosis and chromosome dynamics [Genes]   
NDEx NetworkNCAPD2
Atlas of Cancer Signalling NetworkNCAPD2
Wikipedia pathwaysNCAPD2
Orthology - Evolution
OrthoDB9918
GeneTree (enSembl)ENSG00000010292
Phylogenetic Trees/Animal Genes : TreeFamNCAPD2
HOVERGENQ15021
HOGENOMQ15021
Homologs : HomoloGeneNCAPD2
Homology/Alignments : Family Browser (UCSC)NCAPD2
Gene fusions - Rearrangements
Fusion : MitelmanNCAPD2/PRPF3 [12p13.31/1q21.2]  
Fusion : MitelmanNCAPD2/VWF [12p13.31/12p13.31]  [t(12;12)(p13;p13)]  
Fusion: TCGANCAPD2 12p13.31 VWF 12p13.31 LUAD
Fusion Cancer (Beijing)NCAPD2 [12p13.31]  -  NPSR1-AS1 [7p14.3]  [FUSC001056]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCAPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCAPD2
dbVarNCAPD2
ClinVarNCAPD2
1000_GenomesNCAPD2 
Exome Variant ServerNCAPD2
ExAC (Exome Aggregation Consortium)NCAPD2 (select the gene name)
Genetic variants : HAPMAP9918
Genomic Variants (DGV)NCAPD2 [DGVbeta]
DECIPHERNCAPD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCAPD2 
Mutations
ICGC Data PortalNCAPD2 
TCGA Data PortalNCAPD2 
Broad Tumor PortalNCAPD2
OASIS PortalNCAPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCAPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCAPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCAPD2
DgiDB (Drug Gene Interaction Database)NCAPD2
DoCM (Curated mutations)NCAPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCAPD2 (select a term)
intoGenNCAPD2
Cancer3DNCAPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615638   
Orphanet
MedgenNCAPD2
Genetic Testing Registry NCAPD2
NextProtQ15021 [Medical]
TSGene9918
GENETestsNCAPD2
Target ValidationNCAPD2
Huge Navigator NCAPD2 [HugePedia]
snp3D : Map Gene to Disease9918
BioCentury BCIQNCAPD2
ClinGenNCAPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9918
Chemical/Pharm GKB GenePA162397021
Clinical trialNCAPD2
Miscellaneous
canSAR (ICR)NCAPD2 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCAPD2
EVEXNCAPD2
GoPubMedNCAPD2
iHOPNCAPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:46:17 CEST 2017

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