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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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NCAPD3 (non-SMC condensin II complex, subunit D3)

Identity

Other namesCAP-D3
CAPD3
hCAP-D3
hHCP-6
hcp-6
HGNC (Hugo) NCAPD3
LocusID (NCBI) 23310
Location 11q25
Location_base_pair Starts at 134022337 and ends at 134094426 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCAPD3   28952
Cards
Entrez_Gene (NCBI)NCAPD3  23310  non-SMC condensin II complex, subunit D3
GeneCards (Weizmann)NCAPD3
Ensembl hg19 (Hinxton)ENSG00000151503 [Gene_View]  chr11:134022337-134094426 [Contig_View]  NCAPD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151503 [Gene_View]  chr11:134022337-134094426 [Contig_View]  NCAPD3 [Vega]
ICGC DataPortalENSG00000151503
cBioPortalNCAPD3
AceView (NCBI)NCAPD3
Genatlas (Paris)NCAPD3
WikiGenes23310
SOURCE (Princeton)NCAPD3
Genomic and cartography
GoldenPath hg19 (UCSC)NCAPD3  -     chr11:134022337-134094426 -  11q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NCAPD3  -     11q25   [Description]    (hg38-Dec_2013)
EnsemblNCAPD3 - 11q25 [CytoView hg19]  NCAPD3 - 11q25 [CytoView hg38]
Mapping of homologs : NCBINCAPD3 [Mapview hg19]  NCAPD3 [Mapview hg38]
OMIM609276   
Gene and transcription
Genbank (Entrez)AF070553 AK025549 AK025667 AK095267 AK124878
RefSeq transcript (Entrez)NM_015261
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_033899 NW_001838046 NW_004929381
Consensus coding sequences : CCDS (NCBI)NCAPD3
Cluster EST : UnigeneHs.438550 [ NCBI ]
CGAP (NCI)Hs.438550
Alternative Splicing : Fast-db (Paris)GSHG0006348
Alternative Splicing GalleryENSG00000151503
Gene ExpressionNCAPD3 [ NCBI-GEO ]     NCAPD3 [ SEEK ]   NCAPD3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42695 (Uniprot)
NextProtP42695  [Medical]
With graphics : InterProP42695
Splice isoforms : SwissVarP42695 (Swissvar)
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CND1/NCAPD3    Cohesin_HEAT    NCAPD3   
Related proteins : CluSTrP42695
Domain families : Pfam (Sanger)Cohesin_HEAT (PF12765)   
Domain families : Pfam (NCBI)pfam12765   
DMDM Disease mutations23310
Blocks (Seattle)P42695
Human Protein AtlasENSG00000151503
Peptide AtlasP42695
HPRD11062
IPIIPI00747787   IPI00984992   IPI00983931   IPI00984935   IPI00983163   IPI00982568   IPI00977250   IPI00980765   IPI00975924   IPI00976603   
Protein Interaction databases
DIP (DOE-UCLA)P42695
IntAct (EBI)P42695
FunCoupENSG00000151503
BioGRIDNCAPD3
IntegromeDBNCAPD3
STRING (EMBL)NCAPD3
Ontologies - Pathways
QuickGOP42695
Ontology : AmiGOmitotic cell cycle  nuclear condensin complex  protein binding  nucleoplasm  mitotic chromosome condensation  membrane  nuclear centromeric heterochromatin  methylated histone binding  germinal vesicle  
Ontology : EGO-EBImitotic cell cycle  nuclear condensin complex  protein binding  nucleoplasm  mitotic chromosome condensation  membrane  nuclear centromeric heterochromatin  methylated histone binding  germinal vesicle  
Protein Interaction DatabaseNCAPD3
DoCM (Curated mutations)NCAPD3
Wikipedia pathwaysNCAPD3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerNCAPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCAPD3
dbVarNCAPD3
ClinVarNCAPD3
1000_GenomesNCAPD3 
Exome Variant ServerNCAPD3
SNP (GeneSNP Utah)NCAPD3
SNP : HGBaseNCAPD3
Genetic variants : HAPMAPNCAPD3
Genomic Variants (DGV)NCAPD3 [DGVbeta]
Mutations
ICGC Data PortalENSG00000151503 
Somatic Mutations in Cancer : COSMICNCAPD3 
CONAN: Copy Number AnalysisNCAPD3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:134022337-134094426
Mutations and Diseases : HGMDNCAPD3
OMIM609276   
MedgenNCAPD3
NextProtP42695 [Medical]
GENETestsNCAPD3
Disease Genetic AssociationNCAPD3
Huge Navigator NCAPD3 [HugePedia]  NCAPD3 [HugeCancerGEM]
snp3D : Map Gene to Disease23310
DGIdb (Drug Gene Interaction db)NCAPD3
General knowledge
Homologs : HomoloGeneNCAPD3
Homology/Alignments : Family Browser (UCSC)NCAPD3
Phylogenetic Trees/Animal Genes : TreeFamNCAPD3
Chemical/Protein Interactions : CTD23310
Chemical/Pharm GKB GenePA162397090
Clinical trialNCAPD3
Cancer Resource (Charite)ENSG00000151503
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
CoreMineNCAPD3
GoPubMedNCAPD3
iHOPNCAPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 17:37:51 CET 2015

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