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NCAPD3 (non-SMC condensin II complex, subunit D3)

Identity

Other namesCAP-D3
CAPD3
hCAP-D3
hHCP-6
hcp-6
HGNC (Hugo) NCAPD3
LocusID (NCBI) 23310
Location 11q25
Location_base_pair Starts at 134022337 and ends at 134094426 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCAPD3   28952
Cards
Entrez_Gene (NCBI)NCAPD3  23310  non-SMC condensin II complex, subunit D3
GeneCards (Weizmann)NCAPD3
Ensembl (Hinxton)ENSG00000151503 [Gene_View]  chr11:134022337-134094426 [Contig_View]  NCAPD3 [Vega]
ICGC DataPortalENSG00000151503
cBioPortalNCAPD3
AceView (NCBI)NCAPD3
Genatlas (Paris)NCAPD3
WikiGenes23310
SOURCE (Princeton)NM_015261
Genomic and cartography
GoldenPath (UCSC)NCAPD3  -  11q25   chr11:134022337-134094426 -  11q25   [Description]    (hg19-Feb_2009)
EnsemblNCAPD3 - 11q25 [CytoView]
Mapping of homologs : NCBINCAPD3 [Mapview]
OMIM609276   
Gene and transcription
Genbank (Entrez)AF070553 AK025549 AK025667 AK095267 AK124878
RefSeq transcript (Entrez)NM_015261
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_033899 NW_001838046 NW_004929381
Consensus coding sequences : CCDS (NCBI)NCAPD3
Cluster EST : UnigeneHs.438550 [ NCBI ]
CGAP (NCI)Hs.438550
Alternative Splicing : Fast-db (Paris)GSHG0006348
Alternative Splicing GalleryENSG00000151503
Gene ExpressionNCAPD3 [ NCBI-GEO ]     NCAPD3 [ SEEK ]   NCAPD3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42695 (Uniprot)
NextProtP42695  [Medical]
With graphics : InterProP42695
Splice isoforms : SwissVarP42695 (Swissvar)
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like [organisation]   ARM-type_fold [organisation]   CND1/NCAPD3 [organisation]   Cohesin_HEAT [organisation]   NCAPD3 [organisation]  
Related proteins : CluSTrP42695
Domain families : Pfam (Sanger)Cohesin_HEAT (PF12765)   
Domain families : Pfam (NCBI)pfam12765   
DMDM Disease mutations23310
Blocks (Seattle)P42695
Human Protein AtlasENSG00000151503 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP42695
HPRD11062
IPIIPI00747787   IPI00984992   IPI00983931   IPI00984935   IPI00983163   IPI00982568   IPI00977250   IPI00980765   IPI00975924   IPI00976603   
Protein Interaction databases
DIP (DOE-UCLA)P42695
IntAct (EBI)P42695
FunCoupENSG00000151503
BioGRIDNCAPD3
InParanoidP42695
Interologous Interaction database P42695
IntegromeDBNCAPD3
STRING (EMBL)NCAPD3
Ontologies - Pathways
Ontology : AmiGOnuclear condensin complex  protein binding  mitotic chromosome condensation  nuclear centromeric heterochromatin  methylated histone residue binding  cell division  
Ontology : EGO-EBInuclear condensin complex  protein binding  mitotic chromosome condensation  nuclear centromeric heterochromatin  methylated histone residue binding  cell division  
Protein Interaction DatabaseNCAPD3
Wikipedia pathwaysNCAPD3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NCAPD3
snp3D : Map Gene to Disease23310
SNP (GeneSNP Utah)NCAPD3
SNP : HGBaseNCAPD3
Genetic variants : HAPMAPNCAPD3
Exome VariantNCAPD3
1000_GenomesNCAPD3 
ICGC programENSG00000151503 
Somatic Mutations in Cancer : COSMICNCAPD3 
CONAN: Copy Number AnalysisNCAPD3 
Mutations and Diseases : HGMDNCAPD3
Genomic VariantsNCAPD3  NCAPD3 [DGVbeta]
dbVarNCAPD3
ClinVarNCAPD3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM609276   
MedgenNCAPD3
GENETestsNCAPD3
Disease Genetic AssociationNCAPD3
Huge Navigator NCAPD3 [HugePedia]  NCAPD3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneNCAPD3
Homology/Alignments : Family Browser (UCSC)NCAPD3
Phylogenetic Trees/Animal Genes : TreeFamNCAPD3
Chemical/Protein Interactions : CTD23310
Chemical/Pharm GKB GenePA162397090
Clinical trialNCAPD3
Cancer Resource (Charite)ENSG00000151503
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineNCAPD3
iHOPNCAPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:08:17 CEST 2014

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