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NCAPD3 (non-SMC condensin II complex subunit D3)

Identity

Other namesCAP-D3
CAPD3
hCAP-D3
hHCP-6
hcp-6
HGNC (Hugo) NCAPD3
LocusID (NCBI) 23310
Atlas_Id 50064
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 134022337 and ends at 134094426 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDK5RAP3 (17q21.32) / NCAPD3 (11q25)NCAPD3 (11q25) / ASPH (8q12.3)PPIB (15q22.31) / NCAPD3 (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCAPD3   28952
Cards
Entrez_Gene (NCBI)NCAPD3  23310  non-SMC condensin II complex subunit D3
AliasesCAP-D3; CAPD3; hCAP-D3; hHCP-6; 
hcp-6
GeneCards (Weizmann)NCAPD3
Ensembl hg19 (Hinxton)ENSG00000151503 [Gene_View]  chr11:134022337-134094426 [Contig_View]  NCAPD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151503 [Gene_View]  chr11:134022337-134094426 [Contig_View]  NCAPD3 [Vega]
ICGC DataPortalENSG00000151503
TCGA cBioPortalNCAPD3
AceView (NCBI)NCAPD3
Genatlas (Paris)NCAPD3
WikiGenes23310
SOURCE (Princeton)NCAPD3
Genomic and cartography
GoldenPath hg19 (UCSC)NCAPD3  -     chr11:134022337-134094426 -  11q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NCAPD3  -     11q25   [Description]    (hg38-Dec_2013)
EnsemblNCAPD3 - 11q25 [CytoView hg19]  NCAPD3 - 11q25 [CytoView hg38]
Mapping of homologs : NCBINCAPD3 [Mapview hg19]  NCAPD3 [Mapview hg38]
OMIM609276   
Gene and transcription
Genbank (Entrez)AF070553 AK025549 AK025667 AK095267 AK124878
RefSeq transcript (Entrez)NM_015261
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)NCAPD3
Cluster EST : UnigeneHs.438550 [ NCBI ]
CGAP (NCI)Hs.438550
Alternative Splicing GalleryENSG00000151503
Gene ExpressionNCAPD3 [ NCBI-GEO ]   NCAPD3 [ EBI - ARRAY_EXPRESS ]   NCAPD3 [ SEEK ]   NCAPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)NCAPD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23310
GTEX Portal (Tissue expression)NCAPD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42695 (Uniprot)
NextProtP42695  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42695
Splice isoforms : SwissVarP42695 (Swissvar)
PhosPhoSitePlusP42695
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CND1/NCAPD3    Cnd1_C    NCAPD3   
Domain families : Pfam (Sanger)Cnd1 (PF12717)   
Domain families : Pfam (NCBI)pfam12717   
DMDM Disease mutations23310
Blocks (Seattle)NCAPD3
SuperfamilyP42695
Human Protein AtlasENSG00000151503
Peptide AtlasP42695
HPRD11062
IPIIPI00747787   IPI00984992   IPI00983931   IPI00984935   IPI00983163   IPI00982568   IPI00977250   IPI00980765   IPI00975924   IPI00976603   
Protein Interaction databases
DIP (DOE-UCLA)P42695
IntAct (EBI)P42695
FunCoupENSG00000151503
BioGRIDNCAPD3
STRING (EMBL)NCAPD3
ZODIACNCAPD3
Ontologies - Pathways
QuickGOP42695
Ontology : AmiGOcondensed chromosome, centromeric region  nuclear condensin complex  chromatin binding  protein binding  nucleoplasm  mitotic chromosome condensation  meiotic chromosome condensation  membrane  nuclear pericentric heterochromatin  methylated histone binding  cell division  chromosome separation  
Ontology : EGO-EBIcondensed chromosome, centromeric region  nuclear condensin complex  chromatin binding  protein binding  nucleoplasm  mitotic chromosome condensation  meiotic chromosome condensation  membrane  nuclear pericentric heterochromatin  methylated histone binding  cell division  chromosome separation  
NDEx NetworkNCAPD3
Atlas of Cancer Signalling NetworkNCAPD3
Wikipedia pathwaysNCAPD3
Orthology - Evolution
OrthoDB23310
GeneTree (enSembl)ENSG00000151503
Phylogenetic Trees/Animal Genes : TreeFamNCAPD3
Homologs : HomoloGeneNCAPD3
Homology/Alignments : Family Browser (UCSC)NCAPD3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerNCAPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCAPD3
dbVarNCAPD3
ClinVarNCAPD3
1000_GenomesNCAPD3 
Exome Variant ServerNCAPD3
ExAC (Exome Aggregation Consortium)NCAPD3 (select the gene name)
Genetic variants : HAPMAP23310
Genomic Variants (DGV)NCAPD3 [DGVbeta]
Mutations
ICGC Data PortalNCAPD3 
TCGA Data PortalNCAPD3 
Broad Tumor PortalNCAPD3
OASIS PortalNCAPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCAPD3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCAPD3
DgiDB (Drug Gene Interaction Database)NCAPD3
DoCM (Curated mutations)NCAPD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCAPD3 (select a term)
intoGenNCAPD3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:134022337-134094426  ENSG00000151503
CONAN: Copy Number AnalysisNCAPD3 
Mutations and Diseases : HGMDNCAPD3
OMIM609276   
MedgenNCAPD3
Genetic Testing Registry NCAPD3
NextProtP42695 [Medical]
TSGene23310
GENETestsNCAPD3
Huge Navigator NCAPD3 [HugePedia]
snp3D : Map Gene to Disease23310
BioCentury BCIQNCAPD3
ClinGenNCAPD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23310
Chemical/Pharm GKB GenePA162397090
Clinical trialNCAPD3
Miscellaneous
canSAR (ICR)NCAPD3 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCAPD3
EVEXNCAPD3
GoPubMedNCAPD3
iHOPNCAPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:04:04 CEST 2016

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