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NCAPH (non-SMC condensin I complex subunit H)

Identity

Alias_namesBRRN1
barren (Drosophila) homolog
barren homolog (Drosophila)
barren homolog 1 (Drosophila)
non-SMC condensin I complex, subunit H
Alias_symbol (synonym)CAP-H
hCAP-H
Other alias
HGNC (Hugo) NCAPH
LocusID (NCBI) 23397
Atlas_Id 43631
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96335741 and ends at 96377095 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCAPH (2q11.2) / NCAPH (2q11.2)ZYX (7q34) / NCAPH (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCAPH   1112
Cards
Entrez_Gene (NCBI)NCAPH  23397  non-SMC condensin I complex subunit H
AliasesBRRN1; CAP-H
GeneCards (Weizmann)NCAPH
Ensembl hg19 (Hinxton)ENSG00000121152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121152 [Gene_View]  chr2:96335741-96377095 [Contig_View]  NCAPH [Vega]
ICGC DataPortalENSG00000121152
TCGA cBioPortalNCAPH
AceView (NCBI)NCAPH
Genatlas (Paris)NCAPH
WikiGenes23397
SOURCE (Princeton)NCAPH
Genetics Home Reference (NIH)NCAPH
Genomic and cartography
GoldenPath hg38 (UCSC)NCAPH  -     chr2:96335741-96377095 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCAPH  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblNCAPH - 2q11.2 [CytoView hg19]  NCAPH - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBINCAPH [Mapview hg19]  NCAPH [Mapview hg38]
OMIM602332   
Gene and transcription
Genbank (Entrez)AK291053 AK299248 AK303725 AK308050 AK310649
RefSeq transcript (Entrez)NM_001281710 NM_001281711 NM_001281712 NM_015341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCAPH
Cluster EST : UnigeneHs.308045 [ NCBI ]
CGAP (NCI)Hs.308045
Alternative Splicing GalleryENSG00000121152
Gene ExpressionNCAPH [ NCBI-GEO ]   NCAPH [ EBI - ARRAY_EXPRESS ]   NCAPH [ SEEK ]   NCAPH [ MEM ]
Gene Expression Viewer (FireBrowse)NCAPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23397
GTEX Portal (Tissue expression)NCAPH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15003   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15003  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15003
Splice isoforms : SwissVarQ15003
PhosPhoSitePlusQ15003
Domains : Interpro (EBI)Condensin_barren_su2   
Domain families : Pfam (Sanger)Cnd2 (PF05786)   
Domain families : Pfam (NCBI)pfam05786   
Conserved Domain (NCBI)NCAPH
DMDM Disease mutations23397
Blocks (Seattle)NCAPH
SuperfamilyQ15003
Human Protein AtlasENSG00000121152
Peptide AtlasQ15003
HPRD03820
IPIIPI00299507   IPI00927291   IPI00924630   IPI00925237   IPI00926197   IPI00926909   
Protein Interaction databases
DIP (DOE-UCLA)Q15003
IntAct (EBI)Q15003
FunCoupENSG00000121152
BioGRIDNCAPH
STRING (EMBL)NCAPH
ZODIACNCAPH
Ontologies - Pathways
QuickGOQ15003
Ontology : AmiGOcondensin complex  nuclear condensin complex  chromatin binding  protein binding  nucleus  cytosol  cytosol  mitotic chromosome condensation  meiotic chromosome condensation  membrane  DNA topoisomerase binding  meiotic chromosome segregation  cell division  DNA topoisomerase (ATP-hydrolyzing) activator activity  positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity  
Ontology : EGO-EBIcondensin complex  nuclear condensin complex  chromatin binding  protein binding  nucleus  cytosol  cytosol  mitotic chromosome condensation  meiotic chromosome condensation  membrane  DNA topoisomerase binding  meiotic chromosome segregation  cell division  DNA topoisomerase (ATP-hydrolyzing) activator activity  positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity  
NDEx NetworkNCAPH
Atlas of Cancer Signalling NetworkNCAPH
Wikipedia pathwaysNCAPH
Orthology - Evolution
OrthoDB23397
GeneTree (enSembl)ENSG00000121152
Phylogenetic Trees/Animal Genes : TreeFamNCAPH
HOVERGENQ15003
HOGENOMQ15003
Homologs : HomoloGeneNCAPH
Homology/Alignments : Family Browser (UCSC)NCAPH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCAPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCAPH
dbVarNCAPH
ClinVarNCAPH
1000_GenomesNCAPH 
Exome Variant ServerNCAPH
ExAC (Exome Aggregation Consortium)NCAPH (select the gene name)
Genetic variants : HAPMAP23397
Genomic Variants (DGV)NCAPH [DGVbeta]
DECIPHERNCAPH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCAPH 
Mutations
ICGC Data PortalNCAPH 
TCGA Data PortalNCAPH 
Broad Tumor PortalNCAPH
OASIS PortalNCAPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCAPH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCAPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCAPH
DgiDB (Drug Gene Interaction Database)NCAPH
DoCM (Curated mutations)NCAPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCAPH (select a term)
intoGenNCAPH
Cancer3DNCAPH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602332   
Orphanet
MedgenNCAPH
Genetic Testing Registry NCAPH
NextProtQ15003 [Medical]
TSGene23397
GENETestsNCAPH
Target ValidationNCAPH
Huge Navigator NCAPH [HugePedia]
snp3D : Map Gene to Disease23397
BioCentury BCIQNCAPH
ClinGenNCAPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23397
Chemical/Pharm GKB GenePA162397273
Clinical trialNCAPH
Miscellaneous
canSAR (ICR)NCAPH (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCAPH
EVEXNCAPH
GoPubMedNCAPH
iHOPNCAPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:46 CEST 2017

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