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NCAPH2 (non-SMC condensin II complex subunit H2)

Identity

Alias_namesnon-SMC condensin II complex, subunit H2
Alias_symbol (synonym)384D8-2
hCAP-H2
CAP-H2
Other aliasCAPH2
HGNC (Hugo) NCAPH2
LocusID (NCBI) 29781
Atlas_Id 70729
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50508216 and ends at 50524780 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCAPH2 (22q13.33) / USP39 (2p11.2)RPL38 (17q25.1) / NCAPH2 (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCAPH2   25071
Cards
Entrez_Gene (NCBI)NCAPH2  29781  non-SMC condensin II complex subunit H2
AliasesCAPH2
GeneCards (Weizmann)NCAPH2
Ensembl hg19 (Hinxton)ENSG00000025770 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000025770 [Gene_View]  chr22:50508216-50524780 [Contig_View]  NCAPH2 [Vega]
ICGC DataPortalENSG00000025770
TCGA cBioPortalNCAPH2
AceView (NCBI)NCAPH2
Genatlas (Paris)NCAPH2
WikiGenes29781
SOURCE (Princeton)NCAPH2
Genetics Home Reference (NIH)NCAPH2
Genomic and cartography
GoldenPath hg38 (UCSC)NCAPH2  -     chr22:50508216-50524780 +  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCAPH2  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblNCAPH2 - 22q13.33 [CytoView hg19]  NCAPH2 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBINCAPH2 [Mapview hg19]  NCAPH2 [Mapview hg38]
OMIM611230   
Gene and transcription
Genbank (Entrez)AL021682 BC000473 BC001298 BC001509 BC001833
RefSeq transcript (Entrez)NM_001185011 NM_014551 NM_152299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCAPH2
Cluster EST : UnigeneHs.730607 [ NCBI ]
CGAP (NCI)Hs.730607
Alternative Splicing GalleryENSG00000025770
Gene ExpressionNCAPH2 [ NCBI-GEO ]   NCAPH2 [ EBI - ARRAY_EXPRESS ]   NCAPH2 [ SEEK ]   NCAPH2 [ MEM ]
Gene Expression Viewer (FireBrowse)NCAPH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29781
GTEX Portal (Tissue expression)NCAPH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IBW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IBW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IBW4
Splice isoforms : SwissVarQ6IBW4
PhosPhoSitePlusQ6IBW4
Domains : Interpro (EBI)CNDH2_C    H2_M    H2_N    Ncaph2   
Domain families : Pfam (Sanger)CNDH2_C (PF16858)    CNDH2_M (PF16869)    CNDH2_N (PF06278)   
Domain families : Pfam (NCBI)pfam16858    pfam16869    pfam06278   
Conserved Domain (NCBI)NCAPH2
DMDM Disease mutations29781
Blocks (Seattle)NCAPH2
SuperfamilyQ6IBW4
Human Protein AtlasENSG00000025770
Peptide AtlasQ6IBW4
IPIIPI00745556   IPI00889043   IPI00853120   IPI00853264   IPI00943240   IPI00853181   IPI00852911   IPI00853462   IPI00644022   IPI00853592   IPI00917769   IPI00974156   IPI00973953   IPI00973759   IPI00975763   
Protein Interaction databases
DIP (DOE-UCLA)Q6IBW4
IntAct (EBI)Q6IBW4
FunCoupENSG00000025770
BioGRIDNCAPH2
STRING (EMBL)NCAPH2
ZODIACNCAPH2
Ontologies - Pathways
QuickGOQ6IBW4
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nucleoplasm  chromosome  membrane  cell junction  chromosome condensation  intercellular bridge  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nucleoplasm  chromosome  membrane  cell junction  chromosome condensation  intercellular bridge  
NDEx NetworkNCAPH2
Atlas of Cancer Signalling NetworkNCAPH2
Wikipedia pathwaysNCAPH2
Orthology - Evolution
OrthoDB29781
GeneTree (enSembl)ENSG00000025770
Phylogenetic Trees/Animal Genes : TreeFamNCAPH2
HOVERGENQ6IBW4
HOGENOMQ6IBW4
Homologs : HomoloGeneNCAPH2
Homology/Alignments : Family Browser (UCSC)NCAPH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCAPH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCAPH2
dbVarNCAPH2
ClinVarNCAPH2
1000_GenomesNCAPH2 
Exome Variant ServerNCAPH2
ExAC (Exome Aggregation Consortium)NCAPH2 (select the gene name)
Genetic variants : HAPMAP29781
Genomic Variants (DGV)NCAPH2 [DGVbeta]
DECIPHERNCAPH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCAPH2 
Mutations
ICGC Data PortalNCAPH2 
TCGA Data PortalNCAPH2 
Broad Tumor PortalNCAPH2
OASIS PortalNCAPH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCAPH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCAPH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NCAPH2
DgiDB (Drug Gene Interaction Database)NCAPH2
DoCM (Curated mutations)NCAPH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCAPH2 (select a term)
intoGenNCAPH2
Cancer3DNCAPH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611230   
Orphanet
MedgenNCAPH2
Genetic Testing Registry NCAPH2
NextProtQ6IBW4 [Medical]
TSGene29781
GENETestsNCAPH2
Target ValidationNCAPH2
Huge Navigator NCAPH2 [HugePedia]
snp3D : Map Gene to Disease29781
BioCentury BCIQNCAPH2
ClinGenNCAPH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29781
Chemical/Pharm GKB GenePA162397314
Clinical trialNCAPH2
Miscellaneous
canSAR (ICR)NCAPH2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCAPH2
EVEXNCAPH2
GoPubMedNCAPH2
iHOPNCAPH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:47 CEST 2017

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