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NCBP1 (nuclear cap binding protein subunit 1, 80kDa)

Identity

Alias_namesNCBP
nuclear cap binding protein subunit 1, 80kD
nuclear cap binding protein subunit 1, 80kDa
Alias_symbol (synonym)CBP80
Sto1
Other alias
HGNC (Hugo) NCBP1
LocusID (NCBI) 4686
Atlas_Id 70730
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 100395705 and ends at 100436029 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD59 (11p13) / NCBP1 (9q22.33)NCBP1 (9q22.33) / ECT2 (3q26.31)NCBP1 (9q22.33) / TOMM7 (7p15.3)
TOMM7 (7p15.3) / NCBP1 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCBP1   7658
Cards
Entrez_Gene (NCBI)NCBP1  4686  nuclear cap binding protein subunit 1, 80kDa
AliasesCBP80; NCBP; Sto1
GeneCards (Weizmann)NCBP1
Ensembl hg19 (Hinxton)ENSG00000136937 [Gene_View]  chr9:100395705-100436029 [Contig_View]  NCBP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136937 [Gene_View]  chr9:100395705-100436029 [Contig_View]  NCBP1 [Vega]
ICGC DataPortalENSG00000136937
TCGA cBioPortalNCBP1
AceView (NCBI)NCBP1
Genatlas (Paris)NCBP1
WikiGenes4686
SOURCE (Princeton)NCBP1
Genetics Home Reference (NIH)NCBP1
Genomic and cartography
GoldenPath hg19 (UCSC)NCBP1  -     chr9:100395705-100436029 +  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NCBP1  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblNCBP1 - 9q22.33 [CytoView hg19]  NCBP1 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBINCBP1 [Mapview hg19]  NCBP1 [Mapview hg38]
OMIM600469   
Gene and transcription
Genbank (Entrez)AB209233 AK312807 BC001450 CA418527 D32002
RefSeq transcript (Entrez)NM_002486
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)NCBP1
Cluster EST : UnigeneHs.686479 [ NCBI ]
CGAP (NCI)Hs.686479
Alternative Splicing GalleryENSG00000136937
Gene ExpressionNCBP1 [ NCBI-GEO ]   NCBP1 [ EBI - ARRAY_EXPRESS ]   NCBP1 [ SEEK ]   NCBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4686
GTEX Portal (Tissue expression)NCBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ09161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ09161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ09161
Splice isoforms : SwissVarQ09161
PhosPhoSitePlusQ09161
Domains : Interpro (EBI)ARM-type_fold    CBP80    MIF4-like_typ_1/2/3    MIF4G-like_typ-1    MIF4G-like_typ-2    MIF4G-like_typ-3   
Domain families : Pfam (Sanger)MIF4G (PF02854)    MIF4G_like (PF09088)    MIF4G_like_2 (PF09090)   
Domain families : Pfam (NCBI)pfam02854    pfam09088    pfam09090   
Domain families : Smart (EMBL)MIF4G (SM00543)  
Conserved Domain (NCBI)NCBP1
DMDM Disease mutations4686
Blocks (Seattle)NCBP1
PDB (SRS)1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
PDB (PDBSum)1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
PDB (IMB)1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
PDB (RSDB)1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
Structural Biology KnowledgeBase1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
SCOP (Structural Classification of Proteins)1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
CATH (Classification of proteins structures)1H2T    1H2U    1H2V    1H6K    1N52    1N54    3FEX    3FEY   
SuperfamilyQ09161
Human Protein AtlasENSG00000136937
Peptide AtlasQ09161
HPRD02717
IPIIPI00019380   IPI00982334   IPI00513689   
Protein Interaction databases
DIP (DOE-UCLA)Q09161
IntAct (EBI)Q09161
FunCoupENSG00000136937
BioGRIDNCBP1
STRING (EMBL)NCBP1
ZODIACNCBP1
Ontologies - Pathways
QuickGOQ09161
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA cap binding  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  mitochondrion  cytosol  mRNA cap binding complex  nuclear cap binding complex  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  termination of RNA polymerase II transcription  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  mRNA cleavage  mRNA export from nucleus  mRNA export from nucleus  regulation of translational initiation  histone mRNA metabolic process  RNA splicing  gene expression  viral process  ribonucleoprotein complex  gene silencing by RNA  mRNA 3'-end processing  positive regulation of mRNA 3'-end processing  ncRNA metabolic process  poly(A) RNA binding  mRNA cis splicing, via spliceosome  positive regulation of viral transcription  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA cap binding  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  mitochondrion  cytosol  mRNA cap binding complex  nuclear cap binding complex  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  termination of RNA polymerase II transcription  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  mRNA cleavage  mRNA export from nucleus  mRNA export from nucleus  regulation of translational initiation  histone mRNA metabolic process  RNA splicing  gene expression  viral process  ribonucleoprotein complex  gene silencing by RNA  mRNA 3'-end processing  positive regulation of mRNA 3'-end processing  ncRNA metabolic process  poly(A) RNA binding  mRNA cis splicing, via spliceosome  positive regulation of viral transcription  
Pathways : KEGGRNA transport    mRNA surveillance pathway    Spliceosome   
NDEx NetworkNCBP1
Atlas of Cancer Signalling NetworkNCBP1
Wikipedia pathwaysNCBP1
Orthology - Evolution
OrthoDB4686
GeneTree (enSembl)ENSG00000136937
Phylogenetic Trees/Animal Genes : TreeFamNCBP1
HOVERGENQ09161
HOGENOMQ09161
Homologs : HomoloGeneNCBP1
Homology/Alignments : Family Browser (UCSC)NCBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCBP1
dbVarNCBP1
ClinVarNCBP1
1000_GenomesNCBP1 
Exome Variant ServerNCBP1
ExAC (Exome Aggregation Consortium)NCBP1 (select the gene name)
Genetic variants : HAPMAP4686
Genomic Variants (DGV)NCBP1 [DGVbeta]
DECIPHER (Syndromes)9:100395705-100436029  ENSG00000136937
CONAN: Copy Number AnalysisNCBP1 
Mutations
ICGC Data PortalNCBP1 
TCGA Data PortalNCBP1 
Broad Tumor PortalNCBP1
OASIS PortalNCBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCBP1
DgiDB (Drug Gene Interaction Database)NCBP1
DoCM (Curated mutations)NCBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCBP1 (select a term)
intoGenNCBP1
Cancer3DNCBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600469   
Orphanet
MedgenNCBP1
Genetic Testing Registry NCBP1
NextProtQ09161 [Medical]
TSGene4686
GENETestsNCBP1
Huge Navigator NCBP1 [HugePedia]
snp3D : Map Gene to Disease4686
BioCentury BCIQNCBP1
ClinGenNCBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4686
Chemical/Pharm GKB GenePA31461
Clinical trialNCBP1
Miscellaneous
canSAR (ICR)NCBP1 (select the gene name)
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCBP1
EVEXNCBP1
GoPubMedNCBP1
iHOPNCBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:35 CET 2017

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