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NCBP2L (nuclear cap binding protein subunit 2 like)

Identity

Other aliasdJ820B18.1
HGNC (Hugo) NCBP2L
LocusID (NCBI) 392517
Atlas_Id 80179
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 107777733 and ends at 107795777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCBP2L   31795
Cards
Entrez_Gene (NCBI)NCBP2L  392517  nuclear cap binding protein subunit 2 like
AliasesdJ820B18.1
GeneCards (Weizmann)NCBP2L
Ensembl hg19 (Hinxton)ENSG00000170935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170935 [Gene_View]  chrX:107777733-107795777 [Contig_View]  NCBP2L [Vega]
ICGC DataPortalENSG00000170935
TCGA cBioPortalNCBP2L
AceView (NCBI)NCBP2L
Genatlas (Paris)NCBP2L
WikiGenes392517
SOURCE (Princeton)NCBP2L
Genetics Home Reference (NIH)NCBP2L
Genomic and cartography
GoldenPath hg38 (UCSC)NCBP2L  -     chrX:107777733-107795777 +  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCBP2L  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblNCBP2L - Xq22.3 [CytoView hg19]  NCBP2L - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBINCBP2L [Mapview hg19]  NCBP2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI209084
RefSeq transcript (Entrez)NM_001348372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCBP2L
Cluster EST : UnigeneHs.522750 [ NCBI ]
CGAP (NCI)Hs.522750
Alternative Splicing GalleryENSG00000170935
Gene ExpressionNCBP2L [ NCBI-GEO ]   NCBP2L [ EBI - ARRAY_EXPRESS ]   NCBP2L [ SEEK ]   NCBP2L [ MEM ]
Gene Expression Viewer (FireBrowse)NCBP2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392517
GTEX Portal (Tissue expression)NCBP2L
Human Protein AtlasENSG00000170935-NCBP2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6PVI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6PVI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6PVI3
Splice isoforms : SwissVarA6PVI3
PhosPhoSitePlusA6PVI3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)NCBP2    NCBP2_RRM    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)NCBP2L
DMDM Disease mutations392517
Blocks (Seattle)NCBP2L
SuperfamilyA6PVI3
Human Protein Atlas [tissue]ENSG00000170935-NCBP2L [tissue]
Peptide AtlasA6PVI3
IPIIPI00398274   
Protein Interaction databases
DIP (DOE-UCLA)A6PVI3
IntAct (EBI)A6PVI3
FunCoupENSG00000170935
BioGRIDNCBP2L
STRING (EMBL)NCBP2L
ZODIACNCBP2L
Ontologies - Pathways
QuickGOA6PVI3
Ontology : AmiGORNA cap binding  mRNA splicing, via spliceosome  nuclear cap binding complex  mRNA cis splicing, via spliceosome  
Ontology : EGO-EBIRNA cap binding  mRNA splicing, via spliceosome  nuclear cap binding complex  mRNA cis splicing, via spliceosome  
NDEx NetworkNCBP2L
Atlas of Cancer Signalling NetworkNCBP2L
Wikipedia pathwaysNCBP2L
Orthology - Evolution
OrthoDB392517
GeneTree (enSembl)ENSG00000170935
Phylogenetic Trees/Animal Genes : TreeFamNCBP2L
HOVERGENA6PVI3
HOGENOMA6PVI3
Homologs : HomoloGeneNCBP2L
Homology/Alignments : Family Browser (UCSC)NCBP2L
Gene fusions - Rearrangements
Tumor Fusion PortalNCBP2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCBP2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCBP2L
dbVarNCBP2L
ClinVarNCBP2L
1000_GenomesNCBP2L 
Exome Variant ServerNCBP2L
ExAC (Exome Aggregation Consortium)ENSG00000170935
GNOMAD BrowserENSG00000170935
Genetic variants : HAPMAP392517
Genomic Variants (DGV)NCBP2L [DGVbeta]
DECIPHERNCBP2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCBP2L 
Mutations
ICGC Data PortalNCBP2L 
TCGA Data PortalNCBP2L 
Broad Tumor PortalNCBP2L
OASIS PortalNCBP2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCBP2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCBP2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCBP2L
DgiDB (Drug Gene Interaction Database)NCBP2L
DoCM (Curated mutations)NCBP2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCBP2L (select a term)
intoGenNCBP2L
Cancer3DNCBP2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNCBP2L
MedgenNCBP2L
Genetic Testing Registry NCBP2L
NextProtA6PVI3 [Medical]
TSGene392517
GENETestsNCBP2L
Target ValidationNCBP2L
Huge Navigator NCBP2L [HugePedia]
snp3D : Map Gene to Disease392517
BioCentury BCIQNCBP2L
ClinGenNCBP2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392517
Chemical/Pharm GKB GenePA134968208
Clinical trialNCBP2L
Miscellaneous
canSAR (ICR)NCBP2L (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCBP2L
EVEXNCBP2L
GoPubMedNCBP2L
iHOPNCBP2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:14 CET 2017

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