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NCBP3 (nuclear cap binding subunit 3)

Identity

Alias_namesC17orf85
chromosome 17 open reading frame 85
Alias_symbol (synonym)HSA277841
ELG
Other alias
HGNC (Hugo) NCBP3
LocusID (NCBI) 55421
Atlas_Id 77938
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3806751 and ends at 3846251 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EGLN3 (14q13.1) / NCBP3 (17p13.2)NCBP3 (17p13.2) / CAMKK1 (17p13.2)NCBP3 (17p13.2) / LRPAP1 (4p16.3)
NCBP3 (17p13.2) / NCBP3 (17p13.2)NCBP3 (17p13.2) / PPM1E (17q22)TAX1BP3 (17p13.2) / NCBP3 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCBP3   24612
Cards
Entrez_Gene (NCBI)NCBP3  55421  nuclear cap binding subunit 3
AliasesC17orf85; ELG; HSA277841
GeneCards (Weizmann)NCBP3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:3806751-3846251 [Contig_View]  NCBP3 [Vega]
TCGA cBioPortalNCBP3
AceView (NCBI)NCBP3
Genatlas (Paris)NCBP3
WikiGenes55421
SOURCE (Princeton)NCBP3
Genetics Home Reference (NIH)NCBP3
Genomic and cartography
GoldenPath hg38 (UCSC)NCBP3  -     chr17:3806751-3846251 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCBP3  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblNCBP3 - 17p13.2 [CytoView hg19]  NCBP3 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBINCBP3 [Mapview hg19]  NCBP3 [Mapview hg38]
OMIM616624   
Gene and transcription
Genbank (Entrez)AJ277841 AK056724 AK125048 AK223470 BC010707
RefSeq transcript (Entrez)NM_001114118 NM_018553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCBP3
Cluster EST : UnigeneHs.120963 [ NCBI ]
CGAP (NCI)Hs.120963
Gene ExpressionNCBP3 [ NCBI-GEO ]   NCBP3 [ EBI - ARRAY_EXPRESS ]   NCBP3 [ SEEK ]   NCBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)NCBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55421
GTEX Portal (Tissue expression)NCBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53F19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53F19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53F19
Splice isoforms : SwissVarQ53F19
PhosPhoSitePlusQ53F19
Domains : Interpro (EBI)NCBP3    Nucleotide-bd_a/b_plait   
Domain families : Pfam (Sanger)NCBP3 (PF10309)   
Domain families : Pfam (NCBI)pfam10309   
Conserved Domain (NCBI)NCBP3
DMDM Disease mutations55421
Blocks (Seattle)NCBP3
SuperfamilyQ53F19
Peptide AtlasQ53F19
HPRD17116
IPIIPI00782974   IPI00032056   
Protein Interaction databases
DIP (DOE-UCLA)Q53F19
IntAct (EBI)Q53F19
BioGRIDNCBP3
STRING (EMBL)NCBP3
ZODIACNCBP3
Ontologies - Pathways
QuickGOQ53F19
Ontology : AmiGORNA 7-methylguanosine cap binding  RNA binding  mRNA binding  protein binding  nucleus  cytoplasm  7-methylguanosine mRNA capping  nuclear speck  RNA cap binding complex  mRNA transport  defense response to virus  
Ontology : EGO-EBIRNA 7-methylguanosine cap binding  RNA binding  mRNA binding  protein binding  nucleus  cytoplasm  7-methylguanosine mRNA capping  nuclear speck  RNA cap binding complex  mRNA transport  defense response to virus  
NDEx NetworkNCBP3
Atlas of Cancer Signalling NetworkNCBP3
Wikipedia pathwaysNCBP3
Orthology - Evolution
OrthoDB55421
Phylogenetic Trees/Animal Genes : TreeFamNCBP3
HOVERGENQ53F19
HOGENOMQ53F19
Homologs : HomoloGeneNCBP3
Homology/Alignments : Family Browser (UCSC)NCBP3
Gene fusions - Rearrangements
Tumor Fusion PortalNCBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCBP3
dbVarNCBP3
ClinVarNCBP3
1000_GenomesNCBP3 
Exome Variant ServerNCBP3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55421
Genomic Variants (DGV)NCBP3 [DGVbeta]
DECIPHERNCBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCBP3 
Mutations
ICGC Data PortalNCBP3 
TCGA Data PortalNCBP3 
Broad Tumor PortalNCBP3
OASIS PortalNCBP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNCBP3
BioMutasearch NCBP3
DgiDB (Drug Gene Interaction Database)NCBP3
DoCM (Curated mutations)NCBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCBP3 (select a term)
intoGenNCBP3
Cancer3DNCBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616624   
Orphanet
DisGeNETNCBP3
MedgenNCBP3
Genetic Testing Registry NCBP3
NextProtQ53F19 [Medical]
TSGene55421
GENETestsNCBP3
Target ValidationNCBP3
Huge Navigator NCBP3 [HugePedia]
snp3D : Map Gene to Disease55421
BioCentury BCIQNCBP3
ClinGenNCBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55421
Chemical/Pharm GKB GenePA145149545
Clinical trialNCBP3
Miscellaneous
canSAR (ICR)NCBP3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCBP3
EVEXNCBP3
GoPubMedNCBP3
iHOPNCBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:36:24 CET 2017

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