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NCCRP1 (non-specific cytotoxic cell receptor protein 1 homolog (zebrafish))

Identity

Alias_symbol (synonym)LOC342897
NCCRP-1
FBXO50
Other alias
HGNC (Hugo) NCCRP1
LocusID (NCBI) 342897
Atlas_Id 56048
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39687604 and ends at 39692522 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NSUN4 (1p33) / NCCRP1 (19q13.2)PDGFD (11q22.3) / NCCRP1 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCCRP1   33739
Cards
Entrez_Gene (NCBI)NCCRP1  342897  non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
AliasesFBXO50; NCCRP-1
GeneCards (Weizmann)NCCRP1
Ensembl hg19 (Hinxton)ENSG00000188505 [Gene_View]  chr19:39687604-39692522 [Contig_View]  NCCRP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188505 [Gene_View]  chr19:39687604-39692522 [Contig_View]  NCCRP1 [Vega]
ICGC DataPortalENSG00000188505
TCGA cBioPortalNCCRP1
AceView (NCBI)NCCRP1
Genatlas (Paris)NCCRP1
WikiGenes342897
SOURCE (Princeton)NCCRP1
Genetics Home Reference (NIH)NCCRP1
Genomic and cartography
GoldenPath hg19 (UCSC)NCCRP1  -     chr19:39687604-39692522 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NCCRP1  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblNCCRP1 - 19q13.2 [CytoView hg19]  NCCRP1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBINCCRP1 [Mapview hg19]  NCCRP1 [Mapview hg38]
OMIM615901   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001414
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCCRP1
Cluster EST : UnigeneHs.726934 [ NCBI ]
CGAP (NCI)Hs.726934
Alternative Splicing GalleryENSG00000188505
Gene ExpressionNCCRP1 [ NCBI-GEO ]   NCCRP1 [ EBI - ARRAY_EXPRESS ]   NCCRP1 [ SEEK ]   NCCRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCCRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342897
GTEX Portal (Tissue expression)NCCRP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVX7
Splice isoforms : SwissVarQ6ZVX7
PhosPhoSitePlusQ6ZVX7
Domaine pattern : Prosite (Expaxy)FBA (PS51114)   
Domains : Interpro (EBI)F-box-assoc_dom    Galactose-bd-like   
Domain families : Pfam (Sanger)FBA (PF04300)   
Domain families : Pfam (NCBI)pfam04300   
Domain families : Smart (EMBL)FBA (SM01198)  
Conserved Domain (NCBI)NCCRP1
DMDM Disease mutations342897
Blocks (Seattle)NCCRP1
SuperfamilyQ6ZVX7
Human Protein AtlasENSG00000188505
Peptide AtlasQ6ZVX7
HPRD17357
IPIIPI00247167   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVX7
IntAct (EBI)Q6ZVX7
FunCoupENSG00000188505
BioGRIDNCCRP1
STRING (EMBL)NCCRP1
ZODIACNCCRP1
Ontologies - Pathways
QuickGOQ6ZVX7
Ontology : AmiGOcytoplasm  positive regulation of cell proliferation  extracellular exosome  
Ontology : EGO-EBIcytoplasm  positive regulation of cell proliferation  extracellular exosome  
NDEx NetworkNCCRP1
Atlas of Cancer Signalling NetworkNCCRP1
Wikipedia pathwaysNCCRP1
Orthology - Evolution
OrthoDB342897
GeneTree (enSembl)ENSG00000188505
Phylogenetic Trees/Animal Genes : TreeFamNCCRP1
HOVERGENQ6ZVX7
HOGENOMQ6ZVX7
Homologs : HomoloGeneNCCRP1
Homology/Alignments : Family Browser (UCSC)NCCRP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCCRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCCRP1
dbVarNCCRP1
ClinVarNCCRP1
1000_GenomesNCCRP1 
Exome Variant ServerNCCRP1
ExAC (Exome Aggregation Consortium)NCCRP1 (select the gene name)
Genetic variants : HAPMAP342897
Genomic Variants (DGV)NCCRP1 [DGVbeta]
DECIPHER (Syndromes)19:39687604-39692522  ENSG00000188505
CONAN: Copy Number AnalysisNCCRP1 
Mutations
ICGC Data PortalNCCRP1 
TCGA Data PortalNCCRP1 
Broad Tumor PortalNCCRP1
OASIS PortalNCCRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCCRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCCRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCCRP1
DgiDB (Drug Gene Interaction Database)NCCRP1
DoCM (Curated mutations)NCCRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCCRP1 (select a term)
intoGenNCCRP1
Cancer3DNCCRP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615901   
Orphanet
MedgenNCCRP1
Genetic Testing Registry NCCRP1
NextProtQ6ZVX7 [Medical]
TSGene342897
GENETestsNCCRP1
Huge Navigator NCCRP1 [HugePedia]
snp3D : Map Gene to Disease342897
BioCentury BCIQNCCRP1
ClinGenNCCRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342897
Chemical/Pharm GKB GenePA164723566
Clinical trialNCCRP1
Miscellaneous
canSAR (ICR)NCCRP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCCRP1
EVEXNCCRP1
GoPubMedNCCRP1
iHOPNCCRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:11:49 CEST 2017

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