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NCCRP1 (NCCRP1, F-box associated domain containing)

Identity

Alias (NCBI)FBXO50
NCCRP-1
HGNC (Hugo) NCCRP1
HGNC Alias symbLOC342897
NCCRP-1
FBXO50
HGNC Previous namenon-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
LocusID (NCBI) 342897
Atlas_Id 56048
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39196964 and ends at 39201884 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NSUN4 (1p33) / NCCRP1 (19q13.2)PDGFD (11q22.3) / NCCRP1 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NCCRP1   33739
Cards
Entrez_Gene (NCBI)NCCRP1    NCCRP1, F-box associated domain containing
AliasesFBXO50; NCCRP-1
GeneCards (Weizmann)NCCRP1
Ensembl hg19 (Hinxton)ENSG00000188505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188505 [Gene_View]  ENSG00000188505 [Sequence]  chr19:39196964-39201884 [Contig_View]  NCCRP1 [Vega]
ICGC DataPortalENSG00000188505
TCGA cBioPortalNCCRP1
AceView (NCBI)NCCRP1
Genatlas (Paris)NCCRP1
SOURCE (Princeton)NCCRP1
Genetics Home Reference (NIH)NCCRP1
Genomic and cartography
GoldenPath hg38 (UCSC)NCCRP1  -     chr19:39196964-39201884 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCCRP1  -     19q13.2   [Description]    (hg19-Feb_2009)
GoldenPathNCCRP1 - 19q13.2 [CytoView hg19]  NCCRP1 - 19q13.2 [CytoView hg38]
ImmunoBaseENSG00000188505
Genome Data Viewer NCBINCCRP1 [Mapview hg19]  
OMIM615901   
Gene and transcription
Genbank (Entrez)AK123941 BC067874 BC092493
RefSeq transcript (Entrez)NM_001001414
Consensus coding sequences : CCDS (NCBI)NCCRP1
Gene ExpressionNCCRP1 [ NCBI-GEO ]   NCCRP1 [ EBI - ARRAY_EXPRESS ]   NCCRP1 [ SEEK ]   NCCRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCCRP1 [ Firebrowse - Broad ]
GenevisibleExpression of NCCRP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342897
GTEX Portal (Tissue expression)NCCRP1
Human Protein AtlasENSG00000188505-NCCRP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVX7
PhosPhoSitePlusQ6ZVX7
Domaine pattern : Prosite (Expaxy)FBA (PS51114)   
Domains : Interpro (EBI)F-box-assoc_dom    F-box_only    Galactose-bd-like_sf   
Domain families : Pfam (Sanger)FBA (PF04300)   
Domain families : Pfam (NCBI)pfam04300   
Domain families : Smart (EMBL)FBA (SM01198)  
Conserved Domain (NCBI)NCCRP1
SuperfamilyQ6ZVX7
AlphaFold pdb e-kbQ6ZVX7   
Human Protein Atlas [tissue]ENSG00000188505-NCCRP1 [tissue]
HPRD17357
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVX7
IntAct (EBI)Q6ZVX7
BioGRIDNCCRP1
STRING (EMBL)NCCRP1
ZODIACNCCRP1
Ontologies - Pathways
QuickGOQ6ZVX7
Ontology : AmiGOprotein binding  cytoplasm  cytoplasm  glycoprotein catabolic process  positive regulation of cell population proliferation  protein ubiquitination  SCF ubiquitin ligase complex  ubiquitin-dependent ERAD pathway  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasm  glycoprotein catabolic process  positive regulation of cell population proliferation  protein ubiquitination  SCF ubiquitin ligase complex  ubiquitin-dependent ERAD pathway  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  extracellular exosome  
NDEx NetworkNCCRP1
Atlas of Cancer Signalling NetworkNCCRP1
Wikipedia pathwaysNCCRP1
Orthology - Evolution
OrthoDB342897
GeneTree (enSembl)ENSG00000188505
Phylogenetic Trees/Animal Genes : TreeFamNCCRP1
Homologs : HomoloGeneNCCRP1
Homology/Alignments : Family Browser (UCSC)NCCRP1
Gene fusions - Rearrangements
Fusion : QuiverNCCRP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCCRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCCRP1
dbVarNCCRP1
ClinVarNCCRP1
MonarchNCCRP1
1000_GenomesNCCRP1 
Exome Variant ServerNCCRP1
GNOMAD BrowserENSG00000188505
Varsome BrowserNCCRP1
ACMGNCCRP1 variants
VarityQ6ZVX7
Genomic Variants (DGV)NCCRP1 [DGVbeta]
DECIPHERNCCRP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCCRP1 
Mutations
ICGC Data PortalNCCRP1 
TCGA Data PortalNCCRP1 
Broad Tumor PortalNCCRP1
OASIS PortalNCCRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCCRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNCCRP1
Mutations and Diseases : HGMDNCCRP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNCCRP1
DgiDB (Drug Gene Interaction Database)NCCRP1
DoCM (Curated mutations)NCCRP1
CIViC (Clinical Interpretations of Variants in Cancer)NCCRP1
Cancer3DNCCRP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615901   
Orphanet
DisGeNETNCCRP1
MedgenNCCRP1
Genetic Testing Registry NCCRP1
NextProtQ6ZVX7 [Medical]
GENETestsNCCRP1
Target ValidationNCCRP1
Huge Navigator NCCRP1 [HugePedia]
ClinGenNCCRP1
Clinical trials, drugs, therapy
MyCancerGenomeNCCRP1
Protein Interactions : CTDNCCRP1
Pharm GKB GenePA164723566
PharosQ6ZVX7
Clinical trialNCCRP1
Miscellaneous
canSAR (ICR)NCCRP1
HarmonizomeNCCRP1
DataMed IndexNCCRP1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNCCRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:22:14 CEST 2021

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