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NCDN (neurochondrin)

Identity

Alias_symbol (synonym)NCDN-1
NCDN-2
Other alias-
HGNC (Hugo) NCDN
LocusID (NCBI) 23154
Atlas_Id 70734
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36023393 and ends at 36032380 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ISYNA1 (19p13.11) / NCDN (1p34.3)NCDN (1p34.3) / PDGFRA (4q12)NCDN (1p34.3) / RARG (12q13.13)
NCDN (1p34.3) / TMSB10 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCDN   17597
Cards
Entrez_Gene (NCBI)NCDN  23154  neurochondrin
Aliases
GeneCards (Weizmann)NCDN
Ensembl hg19 (Hinxton)ENSG00000020129 [Gene_View]  chr1:36023393-36032380 [Contig_View]  NCDN [Vega]
Ensembl hg38 (Hinxton)ENSG00000020129 [Gene_View]  chr1:36023393-36032380 [Contig_View]  NCDN [Vega]
ICGC DataPortalENSG00000020129
TCGA cBioPortalNCDN
AceView (NCBI)NCDN
Genatlas (Paris)NCDN
WikiGenes23154
SOURCE (Princeton)NCDN
Genetics Home Reference (NIH)NCDN
Genomic and cartography
GoldenPath hg19 (UCSC)NCDN  -     chr1:36023393-36032380 +  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NCDN  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblNCDN - 1p34.3 [CytoView hg19]  NCDN - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBINCDN [Mapview hg19]  NCDN [Mapview hg38]
OMIM608458   
Gene and transcription
Genbank (Entrez)AB011179 AB018739 AB018740 AK293658 AK295979
RefSeq transcript (Entrez)NM_001014839 NM_001014841 NM_014284
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)NCDN
Cluster EST : UnigeneHs.121870 [ NCBI ]
CGAP (NCI)Hs.121870
Alternative Splicing GalleryENSG00000020129
Gene ExpressionNCDN [ NCBI-GEO ]   NCDN [ EBI - ARRAY_EXPRESS ]   NCDN [ SEEK ]   NCDN [ MEM ]
Gene Expression Viewer (FireBrowse)NCDN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23154
GTEX Portal (Tissue expression)NCDN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBB6
Splice isoforms : SwissVarQ9UBB6
PhosPhoSitePlusQ9UBB6
Domains : Interpro (EBI)ARM-type_fold    Neurochondrin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NCDN
DMDM Disease mutations23154
Blocks (Seattle)NCDN
SuperfamilyQ9UBB6
Human Protein AtlasENSG00000020129
Peptide AtlasQ9UBB6
HPRD10530
IPIIPI00549543   IPI00555661   IPI00889000   IPI00908784   IPI00644513   IPI00646150   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBB6
IntAct (EBI)Q9UBB6
FunCoupENSG00000020129
BioGRIDNCDN
STRING (EMBL)NCDN
ZODIACNCDN
Ontologies - Pathways
QuickGOQ9UBB6
Ontology : AmiGOprotein binding  nucleus  cytosol  membrane  axon  dendrite  neuron projection development  neuronal cell body  bone resorption  regulation of neuronal synaptic plasticity  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  membrane  axon  dendrite  neuron projection development  neuronal cell body  bone resorption  regulation of neuronal synaptic plasticity  
NDEx NetworkNCDN
Atlas of Cancer Signalling NetworkNCDN
Wikipedia pathwaysNCDN
Orthology - Evolution
OrthoDB23154
GeneTree (enSembl)ENSG00000020129
Phylogenetic Trees/Animal Genes : TreeFamNCDN
HOVERGENQ9UBB6
HOGENOMQ9UBB6
Homologs : HomoloGeneNCDN
Homology/Alignments : Family Browser (UCSC)NCDN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCDN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCDN
dbVarNCDN
ClinVarNCDN
1000_GenomesNCDN 
Exome Variant ServerNCDN
ExAC (Exome Aggregation Consortium)NCDN (select the gene name)
Genetic variants : HAPMAP23154
Genomic Variants (DGV)NCDN [DGVbeta]
DECIPHER (Syndromes)1:36023393-36032380  ENSG00000020129
CONAN: Copy Number AnalysisNCDN 
Mutations
ICGC Data PortalNCDN 
TCGA Data PortalNCDN 
Broad Tumor PortalNCDN
OASIS PortalNCDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCDN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCDN
DgiDB (Drug Gene Interaction Database)NCDN
DoCM (Curated mutations)NCDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCDN (select a term)
intoGenNCDN
Cancer3DNCDN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608458   
Orphanet
MedgenNCDN
Genetic Testing Registry NCDN
NextProtQ9UBB6 [Medical]
TSGene23154
GENETestsNCDN
Huge Navigator NCDN [HugePedia]
snp3D : Map Gene to Disease23154
BioCentury BCIQNCDN
ClinGenNCDN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23154
Chemical/Pharm GKB GenePA134963729
Clinical trialNCDN
Miscellaneous
canSAR (ICR)NCDN (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCDN
EVEXNCDN
GoPubMedNCDN
iHOPNCDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:36 CET 2017

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