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NCDN (neurochondrin)

Identity

Alias_symbol (synonym)NCDN-1
NCDN-2
Other alias-
HGNC (Hugo) NCDN
LocusID (NCBI) 23154
Atlas_Id 70734
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 35557792 and ends at 35566779 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ISYNA1 (19p13.11) / NCDN (1p34.3)NCDN (1p34.3) / PDGFRA (4q12)NCDN (1p34.3) / RARG (12q13.13)
NCDN (1p34.3) / TMSB10 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCDN   17597
Cards
Entrez_Gene (NCBI)NCDN  23154  neurochondrin
Aliases
GeneCards (Weizmann)NCDN
Ensembl hg19 (Hinxton)ENSG00000020129 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000020129 [Gene_View]  chr1:35557792-35566779 [Contig_View]  NCDN [Vega]
ICGC DataPortalENSG00000020129
TCGA cBioPortalNCDN
AceView (NCBI)NCDN
Genatlas (Paris)NCDN
WikiGenes23154
SOURCE (Princeton)NCDN
Genetics Home Reference (NIH)NCDN
Genomic and cartography
GoldenPath hg38 (UCSC)NCDN  -     chr1:35557792-35566779 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCDN  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblNCDN - 1p34.3 [CytoView hg19]  NCDN - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBINCDN [Mapview hg19]  NCDN [Mapview hg38]
OMIM608458   
Gene and transcription
Genbank (Entrez)AB011179 AB018739 AB018740 AK293658 AK295979
RefSeq transcript (Entrez)NM_001014839 NM_001014841 NM_014284
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCDN
Cluster EST : UnigeneHs.121870 [ NCBI ]
CGAP (NCI)Hs.121870
Alternative Splicing GalleryENSG00000020129
Gene ExpressionNCDN [ NCBI-GEO ]   NCDN [ EBI - ARRAY_EXPRESS ]   NCDN [ SEEK ]   NCDN [ MEM ]
Gene Expression Viewer (FireBrowse)NCDN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23154
GTEX Portal (Tissue expression)NCDN
Human Protein AtlasENSG00000020129-NCDN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBB6
Splice isoforms : SwissVarQ9UBB6
PhosPhoSitePlusQ9UBB6
Domains : Interpro (EBI)ARM-type_fold    Neurochondrin   
Domain families : Pfam (Sanger)Neurochondrin (PF05536)   
Domain families : Pfam (NCBI)pfam05536   
Conserved Domain (NCBI)NCDN
DMDM Disease mutations23154
Blocks (Seattle)NCDN
SuperfamilyQ9UBB6
Human Protein Atlas [tissue]ENSG00000020129-NCDN [tissue]
Peptide AtlasQ9UBB6
HPRD10530
IPIIPI00549543   IPI00555661   IPI00889000   IPI00908784   IPI00644513   IPI00646150   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBB6
IntAct (EBI)Q9UBB6
FunCoupENSG00000020129
BioGRIDNCDN
STRING (EMBL)NCDN
ZODIACNCDN
Ontologies - Pathways
QuickGOQ9UBB6
Ontology : AmiGOprotein binding  nucleus  cytosol  cytosol  membrane  axon  dendrite  neuron projection development  neuronal cell body  bone resorption  regulation of neuronal synaptic plasticity  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  cytosol  membrane  axon  dendrite  neuron projection development  neuronal cell body  bone resorption  regulation of neuronal synaptic plasticity  
NDEx NetworkNCDN
Atlas of Cancer Signalling NetworkNCDN
Wikipedia pathwaysNCDN
Orthology - Evolution
OrthoDB23154
GeneTree (enSembl)ENSG00000020129
Phylogenetic Trees/Animal Genes : TreeFamNCDN
HOVERGENQ9UBB6
HOGENOMQ9UBB6
Homologs : HomoloGeneNCDN
Homology/Alignments : Family Browser (UCSC)NCDN
Gene fusions - Rearrangements
Tumor Fusion PortalNCDN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCDN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCDN
dbVarNCDN
ClinVarNCDN
1000_GenomesNCDN 
Exome Variant ServerNCDN
ExAC (Exome Aggregation Consortium)ENSG00000020129
GNOMAD BrowserENSG00000020129
Genetic variants : HAPMAP23154
Genomic Variants (DGV)NCDN [DGVbeta]
DECIPHERNCDN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCDN 
Mutations
ICGC Data PortalNCDN 
TCGA Data PortalNCDN 
Broad Tumor PortalNCDN
OASIS PortalNCDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCDN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCDN
DgiDB (Drug Gene Interaction Database)NCDN
DoCM (Curated mutations)NCDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCDN (select a term)
intoGenNCDN
Cancer3DNCDN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608458   
Orphanet
DisGeNETNCDN
MedgenNCDN
Genetic Testing Registry NCDN
NextProtQ9UBB6 [Medical]
TSGene23154
GENETestsNCDN
Target ValidationNCDN
Huge Navigator NCDN [HugePedia]
snp3D : Map Gene to Disease23154
BioCentury BCIQNCDN
ClinGenNCDN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23154
Chemical/Pharm GKB GenePA134963729
Clinical trialNCDN
Miscellaneous
canSAR (ICR)NCDN (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCDN
EVEXNCDN
GoPubMedNCDN
iHOPNCDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:01:56 CET 2017

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