Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NCF1B (neutrophil cytosolic factor 1B pseudogene)

Identity

Alias_namesneutrophil cytosolic factor 1B
Alias_symbol (synonym)SH3PXD1B
Other aliasNCF-1B
HGNC (Hugo) NCF1B
LocusID (NCBI) 654816
Atlas_Id 70735
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73220639 and ends at 73235945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AD_1 () / NCF1B (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCF1B   32522
Cards
Entrez_Gene (NCBI)NCF1B  654816  neutrophil cytosolic factor 1B pseudogene
AliasesNCF-1B; SH3PXD1B
GeneCards (Weizmann)NCF1B
Ensembl hg19 (Hinxton)ENSG00000182487 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182487 [Gene_View]  chr7:73220639-73235945 [Contig_View]  NCF1B [Vega]
ICGC DataPortalENSG00000182487
TCGA cBioPortalNCF1B
AceView (NCBI)NCF1B
Genatlas (Paris)NCF1B
WikiGenes654816
SOURCE (Princeton)NCF1B
Genetics Home Reference (NIH)NCF1B
Genomic and cartography
GoldenPath hg38 (UCSC)NCF1B  -     chr7:73220639-73235945 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCF1B  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblNCF1B - 7q11.23 [CytoView hg19]  NCF1B - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBINCF1B [Mapview hg19]  NCF1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK298655 BC080194
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCF1B
Cluster EST : UnigeneHs.655201 [ NCBI ]
CGAP (NCI)Hs.655201
Alternative Splicing GalleryENSG00000182487
Gene ExpressionNCF1B [ NCBI-GEO ]   NCF1B [ EBI - ARRAY_EXPRESS ]   NCF1B [ SEEK ]   NCF1B [ MEM ]
Gene Expression Viewer (FireBrowse)NCF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654816
GTEX Portal (Tissue expression)NCF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI72
Splice isoforms : SwissVarA6NI72
PhosPhoSitePlusA6NI72
Domaine pattern : Prosite (Expaxy)PX (PS50195)    SH3 (PS50002)   
Domains : Interpro (EBI)NADPH_oxidase_p47Phox_C    NECFESHC    P47PHOX    Phox    SH3_domain   
Domain families : Pfam (Sanger)NECFESHC (PF16621)    p47_phox_C (PF08944)    PX (PF00787)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam16621    pfam08944    pfam00787    pfam00018   
Domain families : Smart (EMBL)PX (SM00312)  SH3 (SM00326)  
Conserved Domain (NCBI)NCF1B
DMDM Disease mutations654816
Blocks (Seattle)NCF1B
SuperfamilyA6NI72
Human Protein AtlasENSG00000182487
Peptide AtlasA6NI72
IPIIPI00375156   IPI00783752   
Protein Interaction databases
DIP (DOE-UCLA)A6NI72
IntAct (EBI)A6NI72
FunCoupENSG00000182487
BioGRIDNCF1B
STRING (EMBL)NCF1B
ZODIACNCF1B
Ontologies - Pathways
QuickGOA6NI72
Ontology : AmiGOpodosome  cytoplasm  superoxide metabolic process  superoxide-generating NADPH oxidase activity  superoxide-generating NADPH oxidase activator activity  phosphatidylinositol binding  positive regulation of catalytic activity  oxidation-reduction process  podosome assembly  
Ontology : EGO-EBIpodosome  cytoplasm  superoxide metabolic process  superoxide-generating NADPH oxidase activity  superoxide-generating NADPH oxidase activator activity  phosphatidylinositol binding  positive regulation of catalytic activity  oxidation-reduction process  podosome assembly  
NDEx NetworkNCF1B
Atlas of Cancer Signalling NetworkNCF1B
Wikipedia pathwaysNCF1B
Orthology - Evolution
OrthoDB654816
GeneTree (enSembl)ENSG00000182487
Phylogenetic Trees/Animal Genes : TreeFamNCF1B
HOVERGENA6NI72
HOGENOMA6NI72
Homologs : HomoloGeneNCF1B
Homology/Alignments : Family Browser (UCSC)NCF1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCF1B
dbVarNCF1B
ClinVarNCF1B
1000_GenomesNCF1B 
Exome Variant ServerNCF1B
ExAC (Exome Aggregation Consortium)NCF1B (select the gene name)
Genetic variants : HAPMAP654816
Genomic Variants (DGV)NCF1B [DGVbeta]
DECIPHERNCF1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCF1B 
Mutations
ICGC Data PortalNCF1B 
TCGA Data PortalNCF1B 
Broad Tumor PortalNCF1B
OASIS PortalNCF1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNCF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCF1B
DgiDB (Drug Gene Interaction Database)NCF1B
DoCM (Curated mutations)NCF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCF1B (select a term)
intoGenNCF1B
Cancer3DNCF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNCF1B
Genetic Testing Registry NCF1B
NextProtA6NI72 [Medical]
TSGene654816
GENETestsNCF1B
Huge Navigator NCF1B [HugePedia]
snp3D : Map Gene to Disease654816
BioCentury BCIQNCF1B
ClinGenNCF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654816
Chemical/Pharm GKB GenePA143485556
Clinical trialNCF1B
Miscellaneous
canSAR (ICR)NCF1B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCF1B
EVEXNCF1B
GoPubMedNCF1B
iHOPNCF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:44:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.