Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NCF1C (neutrophil cytosolic factor 1C pseudogene)

Identity

Alias_namesneutrophil cytosolic factor 1C
Alias_symbol (synonym)SH3PXD1C
Other alias
HGNC (Hugo) NCF1C
LocusID (NCBI) 654817
Atlas_Id 46255
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75156578 and ends at 75171998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AD_1 () / NCF1C (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCF1C   32523
Cards
Entrez_Gene (NCBI)NCF1C  654817  neutrophil cytosolic factor 1C pseudogene
AliasesSH3PXD1C
GeneCards (Weizmann)NCF1C
Ensembl hg19 (Hinxton)ENSG00000165178 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165178 [Gene_View]  chr7:75156578-75171998 [Contig_View]  NCF1C [Vega]
ICGC DataPortalENSG00000165178
TCGA cBioPortalNCF1C
AceView (NCBI)NCF1C
Genatlas (Paris)NCF1C
WikiGenes654817
SOURCE (Princeton)NCF1C
Genetics Home Reference (NIH)NCF1C
Genomic and cartography
GoldenPath hg38 (UCSC)NCF1C  -     chr7:75156578-75171998 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCF1C  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblNCF1C - 7q11.23 [CytoView hg19]  NCF1C - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBINCF1C [Mapview hg19]  NCF1C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF330627 AK298739 AK301397 AK316329 BC071711
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCF1C
Cluster EST : UnigeneHs.655201 [ NCBI ]
CGAP (NCI)Hs.655201
Alternative Splicing GalleryENSG00000165178
Gene ExpressionNCF1C [ NCBI-GEO ]   NCF1C [ EBI - ARRAY_EXPRESS ]   NCF1C [ SEEK ]   NCF1C [ MEM ]
Gene Expression Viewer (FireBrowse)NCF1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654817
GTEX Portal (Tissue expression)NCF1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MVU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MVU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MVU1
Splice isoforms : SwissVarA8MVU1
PhosPhoSitePlusA8MVU1
Domaine pattern : Prosite (Expaxy)PX (PS50195)    SH3 (PS50002)   
Domains : Interpro (EBI)NADPH_oxidase_p47Phox_C    NECFESHC    P47PHOX    Phox    SH3_domain   
Domain families : Pfam (Sanger)NECFESHC (PF16621)    p47_phox_C (PF08944)    PX (PF00787)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam16621    pfam08944    pfam00787    pfam00018   
Domain families : Smart (EMBL)PX (SM00312)  SH3 (SM00326)  
Conserved Domain (NCBI)NCF1C
DMDM Disease mutations654817
Blocks (Seattle)NCF1C
SuperfamilyA8MVU1
Human Protein AtlasENSG00000165178
Peptide AtlasA8MVU1
HPRD01990
IPIIPI00027007   
Protein Interaction databases
DIP (DOE-UCLA)A8MVU1
IntAct (EBI)A8MVU1
FunCoupENSG00000165178
BioGRIDNCF1C
STRING (EMBL)NCF1C
ZODIACNCF1C
Ontologies - Pathways
QuickGOA8MVU1
Ontology : AmiGOpodosome  cytoplasm  superoxide metabolic process  superoxide-generating NADPH oxidase activity  superoxide-generating NADPH oxidase activator activity  phosphatidylinositol binding  positive regulation of catalytic activity  oxidation-reduction process  podosome assembly  
Ontology : EGO-EBIpodosome  cytoplasm  superoxide metabolic process  superoxide-generating NADPH oxidase activity  superoxide-generating NADPH oxidase activator activity  phosphatidylinositol binding  positive regulation of catalytic activity  oxidation-reduction process  podosome assembly  
NDEx NetworkNCF1C
Atlas of Cancer Signalling NetworkNCF1C
Wikipedia pathwaysNCF1C
Orthology - Evolution
OrthoDB654817
GeneTree (enSembl)ENSG00000165178
Phylogenetic Trees/Animal Genes : TreeFamNCF1C
HOVERGENA8MVU1
HOGENOMA8MVU1
Homologs : HomoloGeneNCF1C
Homology/Alignments : Family Browser (UCSC)NCF1C
Gene fusions - Rearrangements
Fusion Cancer (Beijing)AD_1 [NCF1C]  -  7q11.23 [FUSC000421]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCF1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCF1C
dbVarNCF1C
ClinVarNCF1C
1000_GenomesNCF1C 
Exome Variant ServerNCF1C
ExAC (Exome Aggregation Consortium)NCF1C (select the gene name)
Genetic variants : HAPMAP654817
Genomic Variants (DGV)NCF1C [DGVbeta]
DECIPHERNCF1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCF1C 
Mutations
ICGC Data PortalNCF1C 
TCGA Data PortalNCF1C 
Broad Tumor PortalNCF1C
OASIS PortalNCF1C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNCF1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCF1C
DgiDB (Drug Gene Interaction Database)NCF1C
DoCM (Curated mutations)NCF1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCF1C (select a term)
intoGenNCF1C
Cancer3DNCF1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNCF1C
Genetic Testing Registry NCF1C
NextProtA8MVU1 [Medical]
TSGene654817
GENETestsNCF1C
Target ValidationNCF1C
Huge Navigator NCF1C [HugePedia]
snp3D : Map Gene to Disease654817
BioCentury BCIQNCF1C
ClinGenNCF1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654817
Chemical/Pharm GKB GenePA143485557
Clinical trialNCF1C
Miscellaneous
canSAR (ICR)NCF1C (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCF1C
EVEXNCF1C
GoPubMedNCF1C
iHOPNCF1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:17 CEST 2017

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