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NCKAP5 (NCK-associated protein 5)

Identity

Alias_symbol (synonym)NAP5
ERIH1
ERIH2
Other alias
HGNC (Hugo) NCKAP5
LocusID (NCBI) 344148
Atlas_Id 70738
Location 2q21.2  [Link to chromosome band 2q21]
Location_base_pair Starts at 133429372 and ends at 134326031 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IMP4 (2q21.1) / NCKAP5 (2q21.2)LYPD1 (2q21.2) / NCKAP5 (2q21.2)MR1 (1q25.3) / NCKAP5 (2q21.2)
NAALADL2 (3q26.31) / NCKAP5 (2q21.2)NCKAP5 (2q21.2) / DYNC2H1 (11q22.3)NCKAP5 (2q21.2) / MALAT1 (11q13.1)
NCKAP5 (2q21.2) / MZT2A (2q21.1)NCKAP5 (2q21.2) / NCKAP5 (2q21.2)NCKAP5 (2q21.2) / SLIT3 (5q34)
OSMR (5p13.1) / NCKAP5 (2q21.2)PLXNA4 (7q32.3) / NCKAP5 (2q21.2)LYPD1 NCKAP5
OSMR NCKAP5NAALADL2 NCKAP5NCKAP5 DYNC2H1
NCKAP5 MZT2A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCKAP5   29847
Cards
Entrez_Gene (NCBI)NCKAP5  344148  NCK-associated protein 5
AliasesERIH1; ERIH2; NAP5
GeneCards (Weizmann)NCKAP5
Ensembl hg19 (Hinxton)ENSG00000176771 [Gene_View]  chr2:133429372-134326031 [Contig_View]  NCKAP5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176771 [Gene_View]  chr2:133429372-134326031 [Contig_View]  NCKAP5 [Vega]
ICGC DataPortalENSG00000176771
TCGA cBioPortalNCKAP5
AceView (NCBI)NCKAP5
Genatlas (Paris)NCKAP5
WikiGenes344148
SOURCE (Princeton)NCKAP5
Genetics Home Reference (NIH)NCKAP5
Genomic and cartography
GoldenPath hg19 (UCSC)NCKAP5  -     chr2:133429372-134326031 -  2q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NCKAP5  -     2q21.2   [Description]    (hg38-Dec_2013)
EnsemblNCKAP5 - 2q21.2 [CytoView hg19]  NCKAP5 - 2q21.2 [CytoView hg38]
Mapping of homologs : NCBINCKAP5 [Mapview hg19]  NCKAP5 [Mapview hg38]
OMIM608789   
Gene and transcription
Genbank (Entrez)AB005217 AK057980 AK092189 AK124659 AY946007
RefSeq transcript (Entrez)NM_207363 NM_207481
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)NCKAP5
Cluster EST : UnigeneHs.537329 [ NCBI ]
CGAP (NCI)Hs.537329
Alternative Splicing GalleryENSG00000176771
Gene ExpressionNCKAP5 [ NCBI-GEO ]   NCKAP5 [ EBI - ARRAY_EXPRESS ]   NCKAP5 [ SEEK ]   NCKAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)NCKAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344148
GTEX Portal (Tissue expression)NCKAP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14513
Splice isoforms : SwissVarO14513
PhosPhoSitePlusO14513
Domains : Interpro (EBI)Nckap5l   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NCKAP5
DMDM Disease mutations344148
Blocks (Seattle)NCKAP5
SuperfamilyO14513
Human Protein AtlasENSG00000176771
Peptide AtlasO14513
HPRD16936
IPIIPI00419253   IPI00807540   IPI00410416   IPI00807489   IPI01009130   
Protein Interaction databases
DIP (DOE-UCLA)O14513
IntAct (EBI)O14513
FunCoupENSG00000176771
BioGRIDNCKAP5
STRING (EMBL)NCKAP5
ZODIACNCKAP5
Ontologies - Pathways
QuickGOO14513
Ontology : AmiGOcellular_component  biological_process  
Ontology : EGO-EBIcellular_component  biological_process  
NDEx NetworkNCKAP5
Atlas of Cancer Signalling NetworkNCKAP5
Wikipedia pathwaysNCKAP5
Orthology - Evolution
OrthoDB344148
GeneTree (enSembl)ENSG00000176771
Phylogenetic Trees/Animal Genes : TreeFamNCKAP5
HOVERGENO14513
HOGENOMO14513
Homologs : HomoloGeneNCKAP5
Homology/Alignments : Family Browser (UCSC)NCKAP5
Gene fusions - Rearrangements
Fusion: TCGALYPD1 NCKAP5
Fusion: TCGAOSMR NCKAP5
Fusion: TCGANAALADL2 NCKAP5
Fusion: TCGANCKAP5 DYNC2H1
Fusion: TCGANCKAP5 MZT2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCKAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCKAP5
dbVarNCKAP5
ClinVarNCKAP5
1000_GenomesNCKAP5 
Exome Variant ServerNCKAP5
ExAC (Exome Aggregation Consortium)NCKAP5 (select the gene name)
Genetic variants : HAPMAP344148
Genomic Variants (DGV)NCKAP5 [DGVbeta]
DECIPHER (Syndromes)2:133429372-134326031  ENSG00000176771
CONAN: Copy Number AnalysisNCKAP5 
Mutations
ICGC Data PortalNCKAP5 
TCGA Data PortalNCKAP5 
Broad Tumor PortalNCKAP5
OASIS PortalNCKAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCKAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCKAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCKAP5
DgiDB (Drug Gene Interaction Database)NCKAP5
DoCM (Curated mutations)NCKAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCKAP5 (select a term)
intoGenNCKAP5
Cancer3DNCKAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608789   
Orphanet
MedgenNCKAP5
Genetic Testing Registry NCKAP5
NextProtO14513 [Medical]
TSGene344148
GENETestsNCKAP5
Huge Navigator NCKAP5 [HugePedia]
snp3D : Map Gene to Disease344148
BioCentury BCIQNCKAP5
ClinGenNCKAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344148
Chemical/Pharm GKB GenePA165696957
Clinical trialNCKAP5
Miscellaneous
canSAR (ICR)NCKAP5 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCKAP5
EVEXNCKAP5
GoPubMedNCKAP5
iHOPNCKAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:37 CET 2017

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