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NCKAP5L (NCK associated protein 5 like)

Identity

Alias_namesKIAA1602
KIAA1602
Other aliasCep169
FP1193
HGNC (Hugo) NCKAP5L
LocusID (NCBI) 57701
Atlas_Id 70739
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49791146 and ends at 49828425 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCKAP5L (12q13.12) / GNL1 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCKAP5L   29321
Cards
Entrez_Gene (NCBI)NCKAP5L  57701  NCK associated protein 5 like
AliasesCep169; FP1193; KIAA1602
GeneCards (Weizmann)NCKAP5L
Ensembl hg19 (Hinxton)ENSG00000167566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167566 [Gene_View]  chr12:49791146-49828425 [Contig_View]  NCKAP5L [Vega]
ICGC DataPortalENSG00000167566
TCGA cBioPortalNCKAP5L
AceView (NCBI)NCKAP5L
Genatlas (Paris)NCKAP5L
WikiGenes57701
SOURCE (Princeton)NCKAP5L
Genetics Home Reference (NIH)NCKAP5L
Genomic and cartography
GoldenPath hg38 (UCSC)NCKAP5L  -     chr12:49791146-49828425 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCKAP5L  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblNCKAP5L - 12q13.12 [CytoView hg19]  NCKAP5L - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBINCKAP5L [Mapview hg19]  NCKAP5L [Mapview hg38]
OMIM615104   
Gene and transcription
Genbank (Entrez)AB046822 AF370366 AK093900 BC007998 BC020433
RefSeq transcript (Entrez)NM_001037806
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCKAP5L
Cluster EST : UnigeneHs.143067 [ NCBI ]
CGAP (NCI)Hs.143067
Alternative Splicing GalleryENSG00000167566
Gene ExpressionNCKAP5L [ NCBI-GEO ]   NCKAP5L [ EBI - ARRAY_EXPRESS ]   NCKAP5L [ SEEK ]   NCKAP5L [ MEM ]
Gene Expression Viewer (FireBrowse)NCKAP5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57701
GTEX Portal (Tissue expression)NCKAP5L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCH0
Splice isoforms : SwissVarQ9HCH0
PhosPhoSitePlusQ9HCH0
Domains : Interpro (EBI)NCKAP5_C    Nckap5l   
Domain families : Pfam (Sanger)NCKAP5 (PF15246)   
Domain families : Pfam (NCBI)pfam15246   
Conserved Domain (NCBI)NCKAP5L
DMDM Disease mutations57701
Blocks (Seattle)NCKAP5L
SuperfamilyQ9HCH0
Human Protein AtlasENSG00000167566
Peptide AtlasQ9HCH0
IPIIPI00902622   IPI00794798   IPI00401001   IPI00973110   IPI00983327   IPI00914897   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCH0
IntAct (EBI)Q9HCH0
FunCoupENSG00000167566
BioGRIDNCKAP5L
STRING (EMBL)NCKAP5L
ZODIACNCKAP5L
Ontologies - Pathways
QuickGOQ9HCH0
Ontology : AmiGOmicrotubule bundle formation  protein binding  cytoplasm  centrosome  microtubule depolymerization  microtubule plus-end  
Ontology : EGO-EBImicrotubule bundle formation  protein binding  cytoplasm  centrosome  microtubule depolymerization  microtubule plus-end  
NDEx NetworkNCKAP5L
Atlas of Cancer Signalling NetworkNCKAP5L
Wikipedia pathwaysNCKAP5L
Orthology - Evolution
OrthoDB57701
GeneTree (enSembl)ENSG00000167566
Phylogenetic Trees/Animal Genes : TreeFamNCKAP5L
HOVERGENQ9HCH0
HOGENOMQ9HCH0
Homologs : HomoloGeneNCKAP5L
Homology/Alignments : Family Browser (UCSC)NCKAP5L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCKAP5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCKAP5L
dbVarNCKAP5L
ClinVarNCKAP5L
1000_GenomesNCKAP5L 
Exome Variant ServerNCKAP5L
ExAC (Exome Aggregation Consortium)NCKAP5L (select the gene name)
Genetic variants : HAPMAP57701
Genomic Variants (DGV)NCKAP5L [DGVbeta]
DECIPHERNCKAP5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCKAP5L 
Mutations
ICGC Data PortalNCKAP5L 
TCGA Data PortalNCKAP5L 
Broad Tumor PortalNCKAP5L
OASIS PortalNCKAP5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCKAP5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCKAP5L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCKAP5L
DgiDB (Drug Gene Interaction Database)NCKAP5L
DoCM (Curated mutations)NCKAP5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCKAP5L (select a term)
intoGenNCKAP5L
Cancer3DNCKAP5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615104   
Orphanet
MedgenNCKAP5L
Genetic Testing Registry NCKAP5L
NextProtQ9HCH0 [Medical]
TSGene57701
GENETestsNCKAP5L
Target ValidationNCKAP5L
Huge Navigator NCKAP5L [HugePedia]
snp3D : Map Gene to Disease57701
BioCentury BCIQNCKAP5L
ClinGenNCKAP5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57701
Chemical/Pharm GKB GenePA165513124
Clinical trialNCKAP5L
Miscellaneous
canSAR (ICR)NCKAP5L (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCKAP5L
EVEXNCKAP5L
GoPubMedNCKAP5L
iHOPNCKAP5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:22 CEST 2017

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