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NCL (nucleolin)

Identity

Other namesC23
HGNC (Hugo) NCL
LocusID (NCBI) 4691
Location 2q37.1
Location_base_pair Starts at 232319459 and ends at 232329205 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCL   7667
Entrez_Gene (NCBI)NCL  4691  nucleolin
Cards
GeneCards (Weizmann)NCL
Ensembl (Hinxton)ENSG00000115053 [Gene_View]  chr2:232319459-232329205 [Contig_View]  NCL [Vega]
AceView (NCBI)NCL
Genatlas (Paris)NCL
SOURCE (Stanford)NM_005381
Genomic and cartography
GoldenPath (UCSC)NCL  -  2q37.1   chr2:232319459-232329205 -  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblNCL - 2q37.1 [CytoView]
Mapping of homologs : NCBINCL [Mapview]
OMIM164035   
Gene and transcription
Genbank (Entrez)AK000221 AK000250 AK001314 AK091742 AK095897
RefSeq transcript (SRS)NM_005381
RefSeq transcript (Entrez)NM_005381
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838867 NW_004078008
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838867 NW_004078008
Consensus coding sequences : CCDS (NCBI)NCL
Cluster EST : UnigeneHs.79110 [ SRS ] Hs.79110 [ NCBI ]
CGAP (NCI)Hs.79110
Alternative Splicing : Fast-db (Paris)GSHG0018409
Alternative Splicing GalleryENSG00000115053
Gene ExpressionNCL [ NCBI-GEO ]   NCL [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19338 (SRS) P19338 (Uniprot)
NextProtP19338
With graphics : InterProP19338
Splice isoforms : SwissVarP19338(Swissvar)
Domaine pattern : Prosite (SRS)RRM (PS50102)   
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (SRS)Nucleotide-bd_a/b_plait    RRM_dom   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Related proteins : CluSTrP19338
Domain families : Pfam (SRS)RRM_1 (PF00076)   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM4691
Blocks (Seattle)P19338
PDB (SRS)2FC8    2FC9    2KRR   
PDB (PDBSum)2FC8    2FC9    2KRR   
PDB (IMB)2FC8    2FC9    2KRR   
PDB (RSDB)2FC8    2FC9    2KRR   
Human Protein AtlasENSG00000115053
HPRD01245
IPIIPI00604620   IPI00444262   IPI00183526   IPI00917429   IPI00916991   IPI00916036   IPI00916188   
Protein Interaction databases
DIP (DOE-UCLA)P19338
IntAct (EBI)P19338
FunCoupENSG00000115053
REACTOMENCL
Protein Interaction Database4691
BioGRIDNCL
InParanoidP19338
Interologous Interaction database P19338
IntegromeDBNCL
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NCL
SNP (GeneSNP Utah)NCL
SNP : HGBaseNCL
Genetic variants : HAPMAPNCL
Somatic Mutations in Cancer : COSMICNCL 
CONAN: Copy Number AnalysisNCL 
Mutations and Diseases : HGMDNCL
OMIM164035   
GENETests164035   
Disease Genetic AssociationNCL
Huge Navigator NCL [HugePedia]  NCL [HugeCancerGEM]
Genomic VariantsNCL  NCL [DGVbeta]
snp3D : Map Gene to Disease4691
General knowledge
Homologs : HomoloGeneNCL
Homology/Alignments : Family Browser (UCSC)NCL
Phylogenetic Trees/Animal Genes : TreeFamNCL
Chemical/Protein Interactions : CTD4691
Chemical/Pharm GKB GenePA31469
Clinical trialNCL
Cancer Resource (Charite)ENSG00000115053
Ontology : AmiGOnucleotide binding  angiogenesis  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cell cortex  protein C-terminus binding  ribonucleoprotein complex  telomeric DNA binding  
Ontology : EGO-EBInucleotide binding  angiogenesis  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cell cortex  protein C-terminus binding  ribonucleoprotein complex  telomeric DNA binding  
Pathways : BIOCARTASARS Coronavirus Protease [Genes]   
Other databases
Probes
Litterature
PubMed204 Pubmed reference(s) in Entrez
PubGeneNCL
iHOPNCL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:29 CEST 2013
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