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NCLN (nicalin)

Identity

Alias_namesnicalin homolog (zebrafish)
Alias_symbol (synonym)NICALIN
NET59
Other alias
HGNC (Hugo) NCLN
LocusID (NCBI) 56926
Atlas_Id 70740
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3185877 and ends at 3209575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTSD (11p15.5) / NCLN (19p13.3)FZR1 (19p13.3) / NCLN (19p13.3)NCLN (19p13.3) / ACSBG2 (19p13.3)
NCLN (19p13.3) / GNA11 (19p13.3)TIAL1 (10q26.11) / NCLN (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCLN   26923
Cards
Entrez_Gene (NCBI)NCLN  56926  nicalin
AliasesNET59
GeneCards (Weizmann)NCLN
Ensembl hg19 (Hinxton)ENSG00000125912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125912 [Gene_View]  chr19:3185877-3209575 [Contig_View]  NCLN [Vega]
ICGC DataPortalENSG00000125912
TCGA cBioPortalNCLN
AceView (NCBI)NCLN
Genatlas (Paris)NCLN
WikiGenes56926
SOURCE (Princeton)NCLN
Genetics Home Reference (NIH)NCLN
Genomic and cartography
GoldenPath hg38 (UCSC)NCLN  -     chr19:3185877-3209575 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCLN  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblNCLN - 19p13.3 [CytoView hg19]  NCLN - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBINCLN [Mapview hg19]  NCLN [Mapview hg38]
OMIM609156   
Gene and transcription
Genbank (Entrez)AK022309 AK125002 AK172848 AK314044 AL136567
RefSeq transcript (Entrez)NM_001321463 NM_020170
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCLN
Cluster EST : UnigeneHs.657032 [ NCBI ]
CGAP (NCI)Hs.657032
Alternative Splicing GalleryENSG00000125912
Gene ExpressionNCLN [ NCBI-GEO ]   NCLN [ EBI - ARRAY_EXPRESS ]   NCLN [ SEEK ]   NCLN [ MEM ]
Gene Expression Viewer (FireBrowse)NCLN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56926
GTEX Portal (Tissue expression)NCLN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969V3
Splice isoforms : SwissVarQ969V3
PhosPhoSitePlusQ969V3
Domains : Interpro (EBI)Nicalin    Peptidase_M28   
Domain families : Pfam (Sanger)Peptidase_M28 (PF04389)   
Domain families : Pfam (NCBI)pfam04389   
Conserved Domain (NCBI)NCLN
DMDM Disease mutations56926
Blocks (Seattle)NCLN
SuperfamilyQ969V3
Human Protein AtlasENSG00000125912
Peptide AtlasQ969V3
HPRD07126
IPIIPI00470649   IPI00607732   
Protein Interaction databases
DIP (DOE-UCLA)Q969V3
IntAct (EBI)Q969V3
FunCoupENSG00000125912
BioGRIDNCLN
STRING (EMBL)NCLN
ZODIACNCLN
Ontologies - Pathways
QuickGOQ969V3
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  regulation of signal transduction  membrane  integral component of membrane  protein destabilization  regulation of protein complex assembly  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  regulation of signal transduction  membrane  integral component of membrane  protein destabilization  regulation of protein complex assembly  
NDEx NetworkNCLN
Atlas of Cancer Signalling NetworkNCLN
Wikipedia pathwaysNCLN
Orthology - Evolution
OrthoDB56926
GeneTree (enSembl)ENSG00000125912
Phylogenetic Trees/Animal Genes : TreeFamNCLN
HOVERGENQ969V3
HOGENOMQ969V3
Homologs : HomoloGeneNCLN
Homology/Alignments : Family Browser (UCSC)NCLN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCLN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCLN
dbVarNCLN
ClinVarNCLN
1000_GenomesNCLN 
Exome Variant ServerNCLN
ExAC (Exome Aggregation Consortium)NCLN (select the gene name)
Genetic variants : HAPMAP56926
Genomic Variants (DGV)NCLN [DGVbeta]
DECIPHERNCLN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCLN 
Mutations
ICGC Data PortalNCLN 
TCGA Data PortalNCLN 
Broad Tumor PortalNCLN
OASIS PortalNCLN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCLN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCLN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCLN
DgiDB (Drug Gene Interaction Database)NCLN
DoCM (Curated mutations)NCLN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCLN (select a term)
intoGenNCLN
Cancer3DNCLN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609156   
Orphanet
MedgenNCLN
Genetic Testing Registry NCLN
NextProtQ969V3 [Medical]
TSGene56926
GENETestsNCLN
Target ValidationNCLN
Huge Navigator NCLN [HugePedia]
snp3D : Map Gene to Disease56926
BioCentury BCIQNCLN
ClinGenNCLN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56926
Chemical/Pharm GKB GenePA134898417
Clinical trialNCLN
Miscellaneous
canSAR (ICR)NCLN (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCLN
EVEXNCLN
GoPubMedNCLN
iHOPNCLN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:49 CEST 2017

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