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NCMAP (non-compact myelin associated protein)

Identity

Alias_namesC1orf130
chromosome 1 open reading frame 130
Alias_symbol (synonym)FLJ42528
MP11
Other alias
HGNC (Hugo) NCMAP
LocusID (NCBI) 400746
Atlas_Id 70741
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24556076 and ends at 24609327 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FECH (18q21.31) / NCMAP (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCMAP   29332
Cards
Entrez_Gene (NCBI)NCMAP  400746  non-compact myelin associated protein
AliasesC1orf130; MP11
GeneCards (Weizmann)NCMAP
Ensembl hg19 (Hinxton)ENSG00000184454 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184454 [Gene_View]  chr1:24556076-24609327 [Contig_View]  NCMAP [Vega]
ICGC DataPortalENSG00000184454
TCGA cBioPortalNCMAP
AceView (NCBI)NCMAP
Genatlas (Paris)NCMAP
WikiGenes400746
SOURCE (Princeton)NCMAP
Genetics Home Reference (NIH)NCMAP
Genomic and cartography
GoldenPath hg38 (UCSC)NCMAP  -     chr1:24556076-24609327 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCMAP  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblNCMAP - 1p36.11 [CytoView hg19]  NCMAP - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBINCMAP [Mapview hg19]  NCMAP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124519 BC050474 BC127785 BC147014 BC147015
RefSeq transcript (Entrez)NM_001010980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCMAP
Cluster EST : UnigeneHs.200253 [ NCBI ]
CGAP (NCI)Hs.200253
Alternative Splicing GalleryENSG00000184454
Gene ExpressionNCMAP [ NCBI-GEO ]   NCMAP [ EBI - ARRAY_EXPRESS ]   NCMAP [ SEEK ]   NCMAP [ MEM ]
Gene Expression Viewer (FireBrowse)NCMAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400746
GTEX Portal (Tissue expression)NCMAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1S8
Splice isoforms : SwissVarQ5T1S8
PhosPhoSitePlusQ5T1S8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NCMAP
DMDM Disease mutations400746
Blocks (Seattle)NCMAP
SuperfamilyQ5T1S8
Human Protein AtlasENSG00000184454
Peptide AtlasQ5T1S8
HPRD16963
IPIIPI00252950   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1S8
IntAct (EBI)Q5T1S8
FunCoupENSG00000184454
BioGRIDNCMAP
STRING (EMBL)NCMAP
ZODIACNCMAP
Ontologies - Pathways
QuickGOQ5T1S8
Ontology : AmiGOintegral component of plasma membrane  structural constituent of myelin sheath  positive regulation of myelination  peripheral nervous system myelin formation  paranode region of axon  Schmidt-Lanterman incisure  
Ontology : EGO-EBIintegral component of plasma membrane  structural constituent of myelin sheath  positive regulation of myelination  peripheral nervous system myelin formation  paranode region of axon  Schmidt-Lanterman incisure  
NDEx NetworkNCMAP
Atlas of Cancer Signalling NetworkNCMAP
Wikipedia pathwaysNCMAP
Orthology - Evolution
OrthoDB400746
GeneTree (enSembl)ENSG00000184454
Phylogenetic Trees/Animal Genes : TreeFamNCMAP
HOVERGENQ5T1S8
HOGENOMQ5T1S8
Homologs : HomoloGeneNCMAP
Homology/Alignments : Family Browser (UCSC)NCMAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCMAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCMAP
dbVarNCMAP
ClinVarNCMAP
1000_GenomesNCMAP 
Exome Variant ServerNCMAP
ExAC (Exome Aggregation Consortium)NCMAP (select the gene name)
Genetic variants : HAPMAP400746
Genomic Variants (DGV)NCMAP [DGVbeta]
DECIPHERNCMAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCMAP 
Mutations
ICGC Data PortalNCMAP 
TCGA Data PortalNCMAP 
Broad Tumor PortalNCMAP
OASIS PortalNCMAP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNCMAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCMAP
DgiDB (Drug Gene Interaction Database)NCMAP
DoCM (Curated mutations)NCMAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCMAP (select a term)
intoGenNCMAP
Cancer3DNCMAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNCMAP
Genetic Testing Registry NCMAP
NextProtQ5T1S8 [Medical]
TSGene400746
GENETestsNCMAP
Target ValidationNCMAP
Huge Navigator NCMAP [HugePedia]
snp3D : Map Gene to Disease400746
BioCentury BCIQNCMAP
ClinGenNCMAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400746
Chemical/Pharm GKB GenePA142672448
Clinical trialNCMAP
Miscellaneous
canSAR (ICR)NCMAP (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCMAP
EVEXNCMAP
GoPubMedNCMAP
iHOPNCMAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:49 CEST 2017

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