NCOA2 (nuclear receptor coactivator 2)

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NCOA2 (nuclear receptor coactivator 2)

Identity

Other names	GRIP1
	KAT13C
	NCoA-2
	SRC2
	TIF2
	bHLHe75
HGNC (Hugo)	NCOA2
LocusID (NCBI)	10499
Atlas_Id	141
Location	8q13.3 [Link to chromosome band 8q13]
Location_base_pair	Starts at 71024267 and ends at 71316020 bp from pter ( according to hg19-Feb_2009)

Fusion genes (updated 2016)	AHRR (5p15.33) / NCOA2 (8q13.3)	AKAP13 (15q25.3) / NCOA2 (8q13.3)	ETV6 (12p13.2) / NCOA2 (8q13.3)
	GTF2I (7q11.23) / NCOA2 (8q13.3)	HEY1 (8q21.13) / NCOA2 (8q13.3)	HMGN3 (6q14.1) / NCOA2 (8q13.3)
	KAT6A (8p11.21) / NCOA2 (8q13.3)	NCOA2 (8q13.3) / ARFGEF1 (8q13.2)	NCOA2 (8q13.3) / CAPZB (1p36.13)
	NCOA2 (8q13.3) / HEY1 (8q21.13)	NCOA2 (8q13.3) / KAT6A (8p11.21)	NCOA2 (8q13.3) / KLHL28 (14q21.2)
	NCOA2 (8q13.3) / LEPROTL1 (8p12)	NCOA2 (8q13.3) / MAP2K3 (17p11.2)	NCOA2 (8q13.3) / NCALD (8q22.3)
	NCOA2 (8q13.3) / NCOA2 (8q13.3)	NCOA2 (8q13.3) / PTPRE (10q26.2)	NCOA2 (8q13.3) / RHOB (2p24.1)
	NCOA2 (8q13.3) / RUNXBP2 ()	NCOA2 (8q13.3) / SLC35B4 (7q33)	NCOA2 (8q13.3) / SLC7A1 (13q12.3)
	NCOA2 (8q13.3) / SNTG1 (8q11.21)	NCOA2 (8q13.3) / ST18 (8q11.23)	NCOA2 (8q13.3) / XKR9 (8q13.3)
	NCOA2 (8q13.3) / ZNF704 (8q21.13)	PAX3 (2q36.1) / NCOA2 (8q13.3)	SH2D6 (2p11.2) / NCOA2 (8q13.3)
	SRF (6p21.1) / NCOA2 (8q13.3)	TEAD1 (11p15.3) / NCOA2 (8q13.3)	THSD7B (2q22.1) / NCOA2 (8q13.3)
	PAX3 2q36.1 / NCOA2 8q13.3	NCOA2 8q13.3 / ARFGEF1 8q13.2	NCOA2 8q13.3 / LEPROTL1 8p12
	NCOA2 8q13.3 / NCALD 8q22.3	NCOA2 8q13.3 / ST18 8q11.23	NCOA2 8q13.3 / XKR9 8q13.3
	SH2D6 2p11.2 / NCOA2 8q13.3

Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to How to contribute

DNA/RNA

Breakpoints

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]

inv(8)(p11q13) KAT6A/NCOA2
t(8;12)(q13;p13) ETV6/NCOA2
t(8;16)(p11;p13) KAT6A/CREBBP

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]

Soft Tissues: Alveolar rhabdomyosarcoma
Soft Tissues: Angiofibroma
Soft Tissues: Rhabdomyosarcoma
Soft tissue tumors: an overview
Soft Tissues: Alveolar rhabdomyosarcoma with t(2;2)(p23;q35) PAX3/NCOA1

External links

	Nomenclature
HGNC (Hugo)	NCOA2 7669
	Cards
Entrez_Gene (NCBI)	NCOA2 10499 nuclear receptor coactivator 2
Aliases	GRIP1; KAT13C; NCoA-2; SRC2;
	TIF2; bHLHe75
GeneCards (Weizmann)	NCOA2
Ensembl hg19 (Hinxton)	ENSG00000140396 [Gene_View] chr8:71024267-71316020 [Contig_View] NCOA2 [Vega]
Ensembl hg38 (Hinxton)	ENSG00000140396 [Gene_View] chr8:71024267-71316020 [Contig_View] NCOA2 [Vega]
ICGC DataPortal	ENSG00000140396
TCGA cBioPortal	NCOA2
AceView (NCBI)	NCOA2
Genatlas (Paris)	NCOA2
WikiGenes	10499
SOURCE (Princeton)	NCOA2
	Genomic and cartography
GoldenPath hg19 (UCSC)	NCOA2 - chr8:71024267-71316020 - 8q13.3 [Description] (hg19-Feb_2009)
GoldenPath hg38 (UCSC)	NCOA2 - 8q13.3 [Description] (hg38-Dec_2013)
Ensembl	NCOA2 - 8q13.3 [CytoView hg19] NCOA2 - 8q13.3 [CytoView hg38]
Mapping of homologs : NCBI	NCOA2 [Mapview hg19] NCOA2 [Mapview hg38]
OMIM	601993
	Gene and transcription
Genbank (Entrez)	AI652063 AK298528 AK308426 AL712418 AW504723
RefSeq transcript (Entrez)	NM_001321703 NM_001321707 NM_001321711 NM_001321712 NM_001321713 NM_006540
RefSeq genomic (Entrez)	NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)	NCOA2
Cluster EST : Unigene	Hs.595378 [ NCBI ]
CGAP (NCI)	Hs.595378
Alternative Splicing Gallery	ENSG00000140396
Gene Expression	NCOA2 [ NCBI-GEO ] NCOA2 [ EBI - ARRAY_EXPRESS ] NCOA2 [ SEEK ] NCOA2 [ MEM ]
Gene Expression Viewer (FireBrowse)	NCOA2 [ Firebrowse - Broad ]
SOURCE (Princeton)	Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60]
Genevisible	Expression in : [tissues] [cell-lines] [cancer] [perturbations]
BioGPS (Tissue expression)	10499
GTEX Portal (Tissue expression)	NCOA2
	Protein : pattern, domain, 3D structure
UniProt/SwissProt	Q15596 (Uniprot)
NextProt	Q15596 [Sequence] [Exons] [Medical] [Publications]
With graphics : InterPro	Q15596
Splice isoforms : SwissVar	Q15596 (Swissvar)
PhosPhoSitePlus	Q15596
Domaine pattern : Prosite (Expaxy)	BHLH (PS50888) PAS (PS50112)
Domains : Interpro (EBI)	bHLH_dom DUF1518 DUF4927 NCOA2 Nuc_rcpt_coact Nuc_rcpt_coact_Ncoa-typ Nuclear_rcpt_coactivator PAC PAS PAS_fold SRC-1 Src1_rcpt_coact
Domain families : Pfam (Sanger)	DUF1518 (PF07469) DUF4927 (PF16279) Nuc_rec_co-act (PF08815) PAS (PF00989) SRC-1 (PF08832)
Domain families : Pfam (NCBI)	pfam07469 pfam16279 pfam08815 pfam00989 pfam08832
Domain families : Smart (EMBL)	HLH (SM00353) PAC (SM00086) PAS (SM00091)
DMDM Disease mutations	10499
Blocks (Seattle)	NCOA2
PDB (SRS)	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
PDB (PDBSum)	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
PDB (IMB)	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
PDB (RSDB)	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
Structural Biology KnowledgeBase	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
SCOP (Structural Classification of Proteins)	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
CATH (Classification of proteins structures)	1GWQ 1GWR 1M2Z 1MV9 1MVC 1MZN 1P93 1T63 1T65 1UHL 1YOK 1ZDT 1ZDU 1ZKY 2AO6 2B1V 2B1Z 2B23 2FAI 2G44 2G5O 2LDC 2P15 2P1T 2P1U 2P1V 2Q7J 2Q7L 2YJD 2ZXZ 2ZY0 3A9E 3CLD 3DZU 3DZY 3E00 3E7C 3E94 3ERD 3FUG 3GN8 3K22 3K23 3KWY 3KYT 3L0E 3L0J 3L0L 3O1D 3O1E 3OAP 3OZJ 3PCU 3PLZ 3Q95 3Q97 3R5M 3UP0 3UP3 4CSJ 4DOS 4E2J 4FHH 4FHI 4IA1 4IA2 4IA3 4IA7 4IQR 4IU7 4IUI 4IV2 4IV4 4IVW 4IVY 4IW6 4IW8 4IWC 4IWF 4K4J 4K6I 4M8E 4M8H 4NIE 4NQA 4OC7 4P6W 4P6X 4PLD 4PLE 4POH 4POJ 4PP3 4PP5 4PP6 4PPP 4PPS 4PXM 4Q0A 4QE6 4QE8 4RFW 4RMC 4RMD 4RME 4RUO 4UDC 4UDD 4WG0 4ZN9 4ZO1
Superfamily	Q15596
Human Protein Atlas	ENSG00000140396
Peptide Atlas	Q15596
HPRD	09066
IPI	IPI00018251 IPI00985123 IPI00983197 IPI00976503 IPI00974076
	Protein Interaction databases
DIP (DOE-UCLA)	Q15596
IntAct (EBI)	Q15596
FunCoup	ENSG00000140396
BioGRID	NCOA2
STRING (EMBL)	NCOA2
ZODIAC	NCOA2
	Ontologies - Pathways
QuickGO	Q15596
Ontology : AmiGO	negative regulation of transcription from RNA polymerase II promoter RNA polymerase II core promoter proximal region sequence-specific DNA binding RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding chromatin binding transcription coactivator activity transcription coactivator activity histone acetyltransferase activity protein binding nucleus nucleoplasm nucleoplasm rough endoplasmic reticulum Golgi apparatus microtubule transcription, DNA-templated regulation of transcription, DNA-templated male gonad development regulation of glucose metabolic process postsynaptic density bile acid and bile salt transport histone acetylation ligand-dependent nuclear receptor binding cerebellum development PDZ domain binding estrogen receptor binding ligand-dependent nuclear receptor transcription coactivator activity thyroid hormone receptor coactivator activity intracellular receptor signaling pathway protein complex binding cellular response to hormone stimulus circadian regulation of gene expression progesterone receptor binding nuclear hormone receptor binding glucocorticoid receptor binding neuronal cell body dendritic spine cellular lipid metabolic process locomotor rhythm positive regulation of female receptivity positive regulation of transcription from RNA polymerase II promoter retinoid X receptor binding thyroid hormone receptor binding protein dimerization activity presynaptic active zone DNA polymerase binding cellular response to Thyroglobulin triiodothyronine positive regulation of receptor activity positive regulation of glucocorticoid receptor signaling pathway
Ontology : EGO-EBI	negative regulation of transcription from RNA polymerase II promoter RNA polymerase II core promoter proximal region sequence-specific DNA binding RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding chromatin binding transcription coactivator activity transcription coactivator activity histone acetyltransferase activity protein binding nucleus nucleoplasm nucleoplasm rough endoplasmic reticulum Golgi apparatus microtubule transcription, DNA-templated regulation of transcription, DNA-templated male gonad development regulation of glucose metabolic process postsynaptic density bile acid and bile salt transport histone acetylation ligand-dependent nuclear receptor binding cerebellum development PDZ domain binding estrogen receptor binding ligand-dependent nuclear receptor transcription coactivator activity thyroid hormone receptor coactivator activity intracellular receptor signaling pathway protein complex binding cellular response to hormone stimulus circadian regulation of gene expression progesterone receptor binding nuclear hormone receptor binding glucocorticoid receptor binding neuronal cell body dendritic spine cellular lipid metabolic process locomotor rhythm positive regulation of female receptivity positive regulation of transcription from RNA polymerase II promoter retinoid X receptor binding thyroid hormone receptor binding protein dimerization activity presynaptic active zone DNA polymerase binding cellular response to Thyroglobulin triiodothyronine positive regulation of receptor activity positive regulation of glucocorticoid receptor signaling pathway
Pathways : KEGG	Thyroid hormone signaling pathway
NDEx Network	NCOA2
Atlas of Cancer Signalling Network	NCOA2
Wikipedia pathways	NCOA2
	Orthology - Evolution
OrthoDB	10499
GeneTree (enSembl)	ENSG00000140396
Phylogenetic Trees/Animal Genes : TreeFam	NCOA2
Homologs : HomoloGene	NCOA2
Homology/Alignments : Family Browser (UCSC)	NCOA2
	Gene fusions - Rearrangements
Fusion: TCGA	NCOA2 8q13.3 ARFGEF1 8q13.2 BRCA
Fusion: TCGA	NCOA2 8q13.3 LEPROTL1 8p12 LUAD
Fusion: TCGA	NCOA2 8q13.3 NCALD 8q22.3 BRCA
Fusion: TCGA	NCOA2 8q13.3 ST18 8q11.23 SKCM
Fusion: TCGA	NCOA2 8q13.3 XKR9 8q13.3 LUAD
Fusion: TCGA	SH2D6 2p11.2 NCOA2 8q13.3 BLCA
	Polymorphisms : SNP, variants
NCBI Variation Viewer	NCOA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)	NCOA2
dbVar	NCOA2
ClinVar	NCOA2
1000_Genomes	NCOA2
Exome Variant Server	NCOA2
ExAC (Exome Aggregation Consortium)	NCOA2 (select the gene name)
Genetic variants : HAPMAP	10499
Genomic Variants (DGV)	NCOA2 [DGVbeta]
	Mutations
ICGC Data Portal	NCOA2
TCGA Data Portal	NCOA2
Broad Tumor Portal	NCOA2
OASIS Portal	NCOA2 [ Somatic mutations - Copy number]
Cancer Gene: Census	NCOA2
Somatic Mutations in Cancer : COSMIC	NCOA2
LOVD (Leiden Open Variation Database)	Whole genome datasets
LOVD (Leiden Open Variation Database)	LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)	LOVD 3.0 shared installation
BioMuta	search NCOA2
DgiDB (Drug Gene Interaction Database)	NCOA2
DoCM (Curated mutations)	NCOA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)	NCOA2 (select a term)
intoGen	NCOA2
Impact of mutations	[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor]
	Diseases
DECIPHER (Syndromes)	8:71024267-71316020 ENSG00000140396
CONAN: Copy Number Analysis	NCOA2
Mutations and Diseases : HGMD	NCOA2
OMIM	601993
Medgen	NCOA2
Genetic Testing Registry	NCOA2
NextProt	Q15596 [Medical]
TSGene	10499
GENETests	NCOA2
Huge Navigator	NCOA2 [HugePedia]
snp3D : Map Gene to Disease	10499
BioCentury BCIQ	NCOA2
ClinGen	NCOA2
	Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD	10499
Chemical/Pharm GKB Gene	PA31471
Clinical trial	NCOA2
	Miscellaneous
canSAR (ICR)	NCOA2 (select the gene name)
	Probes
	Litterature
PubMed	204 Pubmed reference(s) in Entrez
GeneRIFs	Gene References Into Functions (Entrez)
CoreMine	NCOA2
EVEX	NCOA2
GoPubMed	NCOA2
iHOP	NCOA2

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI NCBI

indexed on : Mon Sep 19 19:04:07 CEST 2016

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Atlas of Genetics and Cytogenetics in Oncology and Haematology

NCOA2 (nuclear receptor coactivator 2)

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to How to contribute

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to How to contribute