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NCOA7 (nuclear receptor coactivator 7)

Identity

Other namesERAP140
ESNA1
Nbla00052
Nbla10993
dJ187J11.3
HGNC (Hugo) NCOA7
LocusID (NCBI) 135112
Location 6q22.32
Location_base_pair Starts at 126111909 and ends at 126253176 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCOA7   21081
Entrez_Gene (NCBI)NCOA7  135112  nuclear receptor coactivator 7
Cards
GeneCards (Weizmann)NCOA7
Ensembl (Hinxton)ENSG00000111912 [Gene_View]  chr6:126111909-126253176 [Contig_View]  NCOA7 [Vega]
AceView (NCBI)NCOA7
Genatlas (Paris)NCOA7
SOURCE (Stanford)NM_001122842 NM_001199619 NM_001199620 NM_001199621 NM_001199622 NM_181782
Genomic and cartography
GoldenPath (UCSC)NCOA7  -  6q22.32   chr6:126111909-126253176 +  6q22.32   [Description]    (hg19-Feb_2009)
EnsemblNCOA7 - 6q22.32 [CytoView]
Mapping of homologs : NCBINCOA7 [Mapview]
OMIM609752   
Gene and transcription
Genbank (Entrez)AB074156 AB074157 AF493978 AJ420542 AK094706
RefSeq transcript (SRS)NM_001122842 NM_001199619 NM_001199620 NM_001199621 NM_001199622 NM_181782
RefSeq transcript (Entrez)NM_001122842 NM_001199619 NM_001199620 NM_001199621 NM_001199622 NM_181782
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004078028
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004078028
Consensus coding sequences : CCDS (NCBI)NCOA7
Cluster EST : UnigeneHs.171426 [ SRS ] Hs.171426 [ NCBI ]
CGAP (NCI)Hs.171426
Alternative Splicing : Fast-db (Paris)GSHG0026017
Alternative Splicing GalleryENSG00000111912
Gene ExpressionNCOA7 [ NCBI-GEO ]   NCOA7 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI08 (SRS) Q8NI08 (Uniprot)
NextProtQ8NI08
With graphics : InterProQ8NI08
Splice isoforms : SwissVarQ8NI08(Swissvar)
Domains : Interpro (SRS)GRAM    Peptidoglycan-bd_lysin    Peptidoglycan-bd_Lysin_subgr    TLDc   
Domains : Interpro (EBI)GRAM    Peptidoglycan-bd_lysin    Peptidoglycan-bd_Lysin_subgr    TLDc   
Related proteins : CluSTrQ8NI08
Domain families : Pfam (SRS)GRAM (PF02893)    LysM (PF01476)    TLD (PF07534)   
Domain families : Pfam (Sanger)GRAM (PF02893)    LysM (PF01476)    TLD (PF07534)   
Domain families : Pfam (NCBI)pfam02893    pfam01476    pfam07534   
Domain families : Smart (EMBL)LysM (SM00257)  TLDc (SM00584)  
DMDM135112
Blocks (Seattle)Q8NI08
Human Protein AtlasENSG00000111912
HPRD14814
IPIIPI00453458   IPI00761043   IPI00760865   IPI00760914   IPI00170963   IPI00760829   IPI00983018   IPI00645537   IPI00641305   IPI00640111   IPI00654879   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI08
IntAct (EBI)Q8NI08
FunCoupENSG00000111912
REACTOMENCOA7
Protein Interaction Database135112
BioGRIDNCOA7
InParanoidQ8NI08
Interologous Interaction database Q8NI08
IntegromeDBNCOA7
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NCOA7
SNP (GeneSNP Utah)NCOA7
SNP : HGBaseNCOA7
Genetic variants : HAPMAPNCOA7
Somatic Mutations in Cancer : COSMICNCOA7 
CONAN: Copy Number AnalysisNCOA7 
Mutations and Diseases : HGMDNCOA7
OMIM609752   
GENETests609752   
Disease Genetic AssociationNCOA7
Huge Navigator NCOA7 [HugePedia]  NCOA7 [HugeCancerGEM]
Genomic VariantsNCOA7  NCOA7 [DGVbeta]
snp3D : Map Gene to Disease135112
General knowledge
Homologs : HomoloGeneNCOA7
Homology/Alignments : Family Browser (UCSC)NCOA7
Phylogenetic Trees/Animal Genes : TreeFamNCOA7
Chemical/Protein Interactions : CTD135112
Chemical/Pharm GKB GenePA134905581
Clinical trialNCOA7
Cancer Resource (Charite)ENSG00000111912
Ontology : AmiGOprotein binding  intracellular  nucleus  transcription, DNA-dependent  cell wall macromolecule catabolic process  ligand-dependent nuclear receptor transcription coactivator activity  nuclear hormone receptor binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  intracellular  nucleus  transcription, DNA-dependent  cell wall macromolecule catabolic process  ligand-dependent nuclear receptor transcription coactivator activity  nuclear hormone receptor binding  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
PubGeneNCOA7
iHOPNCOA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:27:48 CEST 2013
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