Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NCOA7 (nuclear receptor coactivator 7)

Identity

Alias_symbol (synonym)ERAP140
dJ187J11.3
TLDC4
Other aliasESNA1
NCOA7-AS
Nbla00052
Nbla10993
HGNC (Hugo) NCOA7
LocusID (NCBI) 135112
Atlas_Id 47414
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 125790763 and ends at 125932030 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HINT3 (6q22.32) / NCOA7 (6q22.32)NCOA7 (6q22.32) / L3MBTL3 (6q23.1)NCOA7 (6q22.32) / NKAIN2 (6q22.31)
TRMT11 (6q22.32) / NCOA7 (6q22.32)TRMT11 6q22.32 / NCOA7 6q22.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCOA7   21081
Cards
Entrez_Gene (NCBI)NCOA7  135112  nuclear receptor coactivator 7
AliasesERAP140; ESNA1; NCOA7-AS; Nbla00052; 
Nbla10993; TLDC4; dJ187J11.3
GeneCards (Weizmann)NCOA7
Ensembl hg19 (Hinxton)ENSG00000111912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111912 [Gene_View]  chr6:125790763-125932030 [Contig_View]  NCOA7 [Vega]
ICGC DataPortalENSG00000111912
TCGA cBioPortalNCOA7
AceView (NCBI)NCOA7
Genatlas (Paris)NCOA7
WikiGenes135112
SOURCE (Princeton)NCOA7
Genetics Home Reference (NIH)NCOA7
Genomic and cartography
GoldenPath hg38 (UCSC)NCOA7  -     chr6:125790763-125932030 +  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCOA7  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblNCOA7 - 6q22.31 [CytoView hg19]  NCOA7 - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBINCOA7 [Mapview hg19]  NCOA7 [Mapview hg38]
OMIM609752   
Gene and transcription
Genbank (Entrez)AB074156 AB074157 AF493978 AJ420542 AK094706
RefSeq transcript (Entrez)NM_001122842 NM_001199619 NM_001199620 NM_001199621 NM_001199622 NM_181782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCOA7
Cluster EST : UnigeneHs.171426 [ NCBI ]
CGAP (NCI)Hs.171426
Alternative Splicing GalleryENSG00000111912
Gene ExpressionNCOA7 [ NCBI-GEO ]   NCOA7 [ EBI - ARRAY_EXPRESS ]   NCOA7 [ SEEK ]   NCOA7 [ MEM ]
Gene Expression Viewer (FireBrowse)NCOA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135112
GTEX Portal (Tissue expression)NCOA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI08
Splice isoforms : SwissVarQ8NI08
PhosPhoSitePlusQ8NI08
Domaine pattern : Prosite (Expaxy)LYSM (PS51782)   
Domains : Interpro (EBI)LysM_dom    TLDc_dom   
Domain families : Pfam (Sanger)LysM (PF01476)    TLD (PF07534)   
Domain families : Pfam (NCBI)pfam01476    pfam07534   
Domain families : Smart (EMBL)LysM (SM00257)  TLDc (SM00584)  
Conserved Domain (NCBI)NCOA7
DMDM Disease mutations135112
Blocks (Seattle)NCOA7
SuperfamilyQ8NI08
Human Protein AtlasENSG00000111912
Peptide AtlasQ8NI08
HPRD14814
IPIIPI00453458   IPI00761043   IPI00760865   IPI00760914   IPI00170963   IPI00760829   IPI00983018   IPI00645537   IPI00641305   IPI00640111   IPI00654879   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI08
IntAct (EBI)Q8NI08
FunCoupENSG00000111912
BioGRIDNCOA7
STRING (EMBL)NCOA7
ZODIACNCOA7
Ontologies - Pathways
QuickGOQ8NI08
Ontology : AmiGOprotein binding  intracellular  nucleus  transcription, DNA-templated  ligand-dependent nuclear receptor transcription coactivator activity  nuclear hormone receptor binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  intracellular  nucleus  transcription, DNA-templated  ligand-dependent nuclear receptor transcription coactivator activity  nuclear hormone receptor binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkNCOA7
Atlas of Cancer Signalling NetworkNCOA7
Wikipedia pathwaysNCOA7
Orthology - Evolution
OrthoDB135112
GeneTree (enSembl)ENSG00000111912
Phylogenetic Trees/Animal Genes : TreeFamNCOA7
HOVERGENQ8NI08
HOGENOMQ8NI08
Homologs : HomoloGeneNCOA7
Homology/Alignments : Family Browser (UCSC)NCOA7
Gene fusions - Rearrangements
Fusion : MitelmanTRMT11/NCOA7 [6q22.32/6q22.32]  [t(6;6)(q22;q22)]  
Fusion: TCGATRMT11 6q22.32 NCOA7 6q22.32 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCOA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCOA7
dbVarNCOA7
ClinVarNCOA7
1000_GenomesNCOA7 
Exome Variant ServerNCOA7
ExAC (Exome Aggregation Consortium)NCOA7 (select the gene name)
Genetic variants : HAPMAP135112
Genomic Variants (DGV)NCOA7 [DGVbeta]
DECIPHERNCOA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCOA7 
Mutations
ICGC Data PortalNCOA7 
TCGA Data PortalNCOA7 
Broad Tumor PortalNCOA7
OASIS PortalNCOA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCOA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCOA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCOA7
DgiDB (Drug Gene Interaction Database)NCOA7
DoCM (Curated mutations)NCOA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCOA7 (select a term)
intoGenNCOA7
Cancer3DNCOA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609752   
Orphanet
MedgenNCOA7
Genetic Testing Registry NCOA7
NextProtQ8NI08 [Medical]
TSGene135112
GENETestsNCOA7
Target ValidationNCOA7
Huge Navigator NCOA7 [HugePedia]
snp3D : Map Gene to Disease135112
BioCentury BCIQNCOA7
ClinGenNCOA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135112
Chemical/Pharm GKB GenePA134905581
Clinical trialNCOA7
Miscellaneous
canSAR (ICR)NCOA7 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCOA7
EVEXNCOA7
GoPubMedNCOA7
iHOPNCOA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:21:40 CEST 2017

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