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NCOR1P1 (nuclear receptor corepressor 1 pseudogene 1)

Identity

Alias_namesC20orf191
chromosome 20 open reading frame 191
Alias_symbol (synonym)bB329D4.2
Other alias
HGNC (Hugo) NCOR1P1
LocusID (NCBI) 149934
Atlas_Id 70742
Location 20p11.1  [Link to chromosome band 20p11]
Location_base_pair Starts at 26103416 and ends at 26114028 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NCOR1P1   16724
Cards
Entrez_Gene (NCBI)NCOR1P1  149934  nuclear receptor corepressor 1 pseudogene 1
AliasesC20orf191; bB329D4.2
GeneCards (Weizmann)NCOR1P1
Ensembl hg19 (Hinxton)ENSG00000240108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240108 [Gene_View]  chr20:26103416-26114028 [Contig_View]  NCOR1P1 [Vega]
ICGC DataPortalENSG00000240108
TCGA cBioPortalNCOR1P1
AceView (NCBI)NCOR1P1
Genatlas (Paris)NCOR1P1
WikiGenes149934
SOURCE (Princeton)NCOR1P1
Genetics Home Reference (NIH)NCOR1P1
Genomic and cartography
GoldenPath hg38 (UCSC)NCOR1P1  -     chr20:26103416-26114028 -  20p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCOR1P1  -     20p11.1   [Description]    (hg19-Feb_2009)
EnsemblNCOR1P1 - 20p11.1 [CytoView hg19]  NCOR1P1 - 20p11.1 [CytoView hg38]
Mapping of homologs : NCBINCOR1P1 [Mapview hg19]  NCOR1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC132806 BC132808 EH318080
RefSeq transcript (Entrez)NM_001039379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCOR1P1
Cluster EST : UnigeneHs.711274 [ NCBI ]
CGAP (NCI)Hs.711274
Alternative Splicing GalleryENSG00000240108
Gene ExpressionNCOR1P1 [ NCBI-GEO ]   NCOR1P1 [ EBI - ARRAY_EXPRESS ]   NCOR1P1 [ SEEK ]   NCOR1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCOR1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149934
GTEX Portal (Tissue expression)NCOR1P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4R4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4R4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4R4
Splice isoforms : SwissVarQ9H4R4
PhosPhoSitePlusQ9H4R4
Domains : Interpro (EBI)N-CoR_GPS2_interact   
Domain families : Pfam (Sanger)GPS2_interact (PF15784)   
Domain families : Pfam (NCBI)pfam15784   
Conserved Domain (NCBI)NCOR1P1
DMDM Disease mutations149934
Blocks (Seattle)NCOR1P1
SuperfamilyQ9H4R4
Human Protein AtlasENSG00000240108
Peptide AtlasQ9H4R4
IPIIPI00301926   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4R4
IntAct (EBI)Q9H4R4
FunCoupENSG00000240108
BioGRIDNCOR1P1
STRING (EMBL)NCOR1P1
ZODIACNCOR1P1
Ontologies - Pathways
QuickGOQ9H4R4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNCOR1P1
Atlas of Cancer Signalling NetworkNCOR1P1
Wikipedia pathwaysNCOR1P1
Orthology - Evolution
OrthoDB149934
GeneTree (enSembl)ENSG00000240108
Phylogenetic Trees/Animal Genes : TreeFamNCOR1P1
HOVERGENQ9H4R4
HOGENOMQ9H4R4
Homologs : HomoloGeneNCOR1P1
Homology/Alignments : Family Browser (UCSC)NCOR1P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCOR1P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCOR1P1
dbVarNCOR1P1
ClinVarNCOR1P1
1000_GenomesNCOR1P1 
Exome Variant ServerNCOR1P1
ExAC (Exome Aggregation Consortium)NCOR1P1 (select the gene name)
Genetic variants : HAPMAP149934
Genomic Variants (DGV)NCOR1P1 [DGVbeta]
DECIPHERNCOR1P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCOR1P1 
Mutations
ICGC Data PortalNCOR1P1 
TCGA Data PortalNCOR1P1 
Broad Tumor PortalNCOR1P1
OASIS PortalNCOR1P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNCOR1P1
BioMutasearch NCOR1P1
DgiDB (Drug Gene Interaction Database)NCOR1P1
DoCM (Curated mutations)NCOR1P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCOR1P1 (select a term)
intoGenNCOR1P1
Cancer3DNCOR1P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNCOR1P1
Genetic Testing Registry NCOR1P1
NextProtQ9H4R4 [Medical]
TSGene149934
GENETestsNCOR1P1
Target ValidationNCOR1P1
Huge Navigator NCOR1P1 [HugePedia]
snp3D : Map Gene to Disease149934
BioCentury BCIQNCOR1P1
ClinGenNCOR1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149934
Chemical/Pharm GKB GenePA25734
Clinical trialNCOR1P1
Miscellaneous
canSAR (ICR)NCOR1P1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCOR1P1
EVEXNCOR1P1
GoPubMedNCOR1P1
iHOPNCOR1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:49 CEST 2017

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