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NCOR2 (nuclear receptor corepressor 2)

Identity

Alias_namesnuclear receptor co-repressor 2
Alias_symbol (synonym)SMRT
SMRTE
TRAC-1
CTG26
TNRC14
Other aliasN-CoR2
SMAP270
SMRTE-tau
TRAC
TRAC1
HGNC (Hugo) NCOR2
LocusID (NCBI) 9612
Atlas_Id 41509
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 124324411 and ends at 124567464 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKLE2 (12q24.33) / NCOR2 (12q24.31)BMP2K (4q21.21) / NCOR2 (12q24.31)CHN1 (2q31.1) / NCOR2 (12q24.31)
HNRNPK (9q21.32) / NCOR2 (12q24.31)LAMA5 (20q13.33) / NCOR2 (12q24.31)MALAT1 (11q13.1) / NCOR2 (12q24.31)
NCOR2 (12q24.31) / DDX27 (20q13.13)NCOR2 (12q24.31) / DHX37 (12q24.31)NCOR2 (12q24.31) / ELN (7q11.23)
NCOR2 (12q24.31) / FBXO33 (14q21.1)NCOR2 (12q24.31) / FMR1NB (Xq27.3)NCOR2 (12q24.31) / GATA4 (8p23.1)
NCOR2 (12q24.31) / ITGB5 (3q21.2)NCOR2 (12q24.31) / OTUD5 (Xp11.23)NCOR2 (12q24.31) / PGC (6p21.1)
NCOR2 (12q24.31) / RPL14 (3p22.1)NCOR2 (12q24.31) / SCARB1 (12q24.31)NCOR2 (12q24.31) / TMEM132D (12q24.33)
PRRC2B (9q34.13) / NCOR2 (12q24.31)SLC4A5 (2p13.1) / NCOR2 (12q24.31)TLN1 (9p13.3) / NCOR2 (12q24.31)
ANKLE2 12q24.33 / NCOR2 12q24.31LAMA5 20q13.33 / NCOR2 12q24.31NCOR2 12q24.31 / DDX27 20q13.13
NCOR2 12q24.31 / DHX37 12q24.31NCOR2 12q24.31 / FMR1NB Xq27.3NCOR2 12q24.31 / GATA4 8p23.1
NCOR2 12q24.31 / ITGB5 3q21.2NCOR2 12q24.31 / PGC 6p21.1NCOR2 12q24.31 / SCARB1 12q24.31
NCOR2 12q24.31 / TMEM132D 12q24.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 25 ]
  Anaplastic large cell lymphoma, ALK-negative
ins(12;8)(p13;q11q21) ETV6/LYN
t(1;3)(q25;q27) GAS5/BCL6
t(1;12)(p36;p13) ETV6/PRDM16
t(3;3)(q25;q27) MBNL1/BCL6
t(3;3)(q27;q27) ST6GAL1/BCL6::del(3)(q27q27) ST6GAL1/BCL6
t(3;3)(q27;q28) EIF4A2/BCL6
t(3;3)(q27;q29) TFRC/BCL6
t(3;6)(q27;p21) SRSF3/BCL6
t(3;6)(q27;p21) PIM1/BCL6
t(3;6)(q27;p21)
t(3;6)(q27;p22) HIST1H4I/BCL6
t(3;6)(q27;q14) SNHG5/BCL6
t(3;6)(q27;q15) ?/BCL6
t(3;7)(q27;q32) FRA7H/BCL6
t(3;9)(q27;p13) GRHPR/BCL6
t(3;9)(q27;p24) DMRT1/BCL6
t(3;11)(q27;q23) POU2AF1/BCL6
t(3;12)(q27;p12) LRMP/BCL6
t(3;12)(q27;p13) GAPDH/BCL6
t(3;14)(q27;q32) HSP90AA1/BCL6
t(3;17)(q26;q12-21) TBL1XR1/RARA
t(3;19)(q27;q13) NAPA/BCL6
t(8;9)(q24;p13) ?/MYC
t(9;17)(p13;p12) PAX5/NCOR1


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)NCOR2   7673
Cards
Entrez_Gene (NCBI)NCOR2  9612  nuclear receptor corepressor 2
AliasesCTG26; N-CoR2; SMAP270; SMRT; 
SMRTE; SMRTE-tau; TNRC14; TRAC; TRAC-1; TRAC1
GeneCards (Weizmann)NCOR2
Ensembl hg19 (Hinxton)ENSG00000196498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196498 [Gene_View]  chr12:124324411-124567464 [Contig_View]  NCOR2 [Vega]
ICGC DataPortalENSG00000196498
TCGA cBioPortalNCOR2
AceView (NCBI)NCOR2
Genatlas (Paris)NCOR2
WikiGenes9612
SOURCE (Princeton)NCOR2
Genetics Home Reference (NIH)NCOR2
Genomic and cartography
GoldenPath hg38 (UCSC)NCOR2  -     chr12:124324411-124567464 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCOR2  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblNCOR2 - 12q24.31 [CytoView hg19]  NCOR2 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBINCOR2 [Mapview hg19]  NCOR2 [Mapview hg38]
OMIM600848   
Gene and transcription
Genbank (Entrez)AB209089 AF113003 AF125672 AK127788 AY965853
RefSeq transcript (Entrez)NM_001077261 NM_001206654 NM_006312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCOR2
Cluster EST : UnigeneHs.137510 [ NCBI ]
CGAP (NCI)Hs.137510
Alternative Splicing GalleryENSG00000196498
Gene ExpressionNCOR2 [ NCBI-GEO ]   NCOR2 [ EBI - ARRAY_EXPRESS ]   NCOR2 [ SEEK ]   NCOR2 [ MEM ]
Gene Expression Viewer (FireBrowse)NCOR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9612
GTEX Portal (Tissue expression)NCOR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y618   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y618  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y618
Splice isoforms : SwissVarQ9Y618
PhosPhoSitePlusQ9Y618
Domaine pattern : Prosite (Expaxy)SANT (PS51293)   
Domains : Interpro (EBI)Homeobox-like    N-CoR_GPS2_interact    SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)GPS2_interact (PF15784)    Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam15784    pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)NCOR2
DMDM Disease mutations9612
Blocks (Seattle)NCOR2
PDB (SRS)1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
PDB (PDBSum)1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
PDB (IMB)1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
PDB (RSDB)1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
Structural Biology KnowledgeBase1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
SCOP (Structural Classification of Proteins)1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
CATH (Classification of proteins structures)1KKQ    1R2B    1XC5    2GPV    2L5G    2LTP    2ODD    2RT5    3R29    3R2A    4A69    4OAR   
SuperfamilyQ9Y618
Human Protein AtlasENSG00000196498
Peptide AtlasQ9Y618
HPRD02910
IPIIPI00001735   IPI00878336   IPI00923596   IPI00923436   IPI00923531   IPI01017993   IPI01009189   IPI00952657   IPI00878709   IPI00952937   IPI00879066   IPI00878871   IPI00879250   IPI00879234   IPI00879606   IPI00879430   IPI00879943   IPI00939494   IPI01012202   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y618
IntAct (EBI)Q9Y618
FunCoupENSG00000196498
BioGRIDNCOR2
STRING (EMBL)NCOR2
ZODIACNCOR2
Ontologies - Pathways
QuickGOQ9Y618
Ontology : AmiGOhistone deacetylase complex  negative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  DNA binding  transcription corepressor activity  transcription corepressor activity  Notch binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  transcription factor binding  membrane  nuclear matrix  nuclear body  ligand-dependent nuclear receptor binding  transcriptional repressor complex  histone deacetylase binding  cellular lipid metabolic process  protein N-terminus binding  regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter  negative regulation of production of miRNAs involved in gene silencing by miRNA  
Ontology : EGO-EBIhistone deacetylase complex  negative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  DNA binding  transcription corepressor activity  transcription corepressor activity  Notch binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  transcription factor binding  membrane  nuclear matrix  nuclear body  ligand-dependent nuclear receptor binding  transcriptional repressor complex  histone deacetylase binding  cellular lipid metabolic process  protein N-terminus binding  regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter  negative regulation of production of miRNAs involved in gene silencing by miRNA  
Pathways : BIOCARTA [Genes]   
Pathways : KEGGNotch signaling pathway    Epstein-Barr virus infection   
NDEx NetworkNCOR2
Atlas of Cancer Signalling NetworkNCOR2
Wikipedia pathwaysNCOR2
Orthology - Evolution
OrthoDB9612
GeneTree (enSembl)ENSG00000196498
Phylogenetic Trees/Animal Genes : TreeFamNCOR2
HOVERGENQ9Y618
HOGENOMQ9Y618
Homologs : HomoloGeneNCOR2
Homology/Alignments : Family Browser (UCSC)NCOR2
Gene fusions - Rearrangements
Fusion : MitelmanANKLE2/NCOR2 [12q24.33/12q24.31]  [t(12;12)(q24;q24)]  
Fusion : MitelmanLAMA5/NCOR2 [20q13.33/12q24.31]  [t(12;20)(q24;q13)]  
Fusion : MitelmanNCOR2/DDX27 [12q24.31/20q13.13]  [t(12;20)(q24;q13)]  
Fusion : MitelmanNCOR2/DHX37 [12q24.31/12q24.31]  [t(12;12)(q24;q24)]  
Fusion : MitelmanNCOR2/ELN [12q24.31/7q11.23]  [t(7;12)(q11;q24)]  
Fusion : MitelmanNCOR2/FMR1NB [12q24.31/Xq27.3]  [t(X;12)(q27;q24)]  
Fusion : MitelmanNCOR2/GATA4 [12q24.31/8p23.1]  [t(8;12)(p23;q24)]  
Fusion : MitelmanNCOR2/ITGB5 [12q24.31/3q21.2]  [t(3;12)(q21;q24)]  
Fusion : MitelmanNCOR2/PGC [12q24.31/6p21.1]  [t(6;12)(p21;q24)]  
Fusion : MitelmanNCOR2/SCARB1 [12q24.31/12q24.31]  [t(12;12)(q24;q24)]  
Fusion : MitelmanNCOR2/TMEM132D [12q24.31/12q24.33]  [t(12;12)(q24;q24)]  
Fusion: TCGAANKLE2 12q24.33 NCOR2 12q24.31 LGG
Fusion: TCGALAMA5 20q13.33 NCOR2 12q24.31 OV
Fusion: TCGANCOR2 12q24.31 DDX27 20q13.13 HNSC
Fusion: TCGANCOR2 12q24.31 DHX37 12q24.31 GBM
Fusion: TCGANCOR2 12q24.31 FMR1NB Xq27.3 KIRC
Fusion: TCGANCOR2 12q24.31 GATA4 8p23.1 LGG
Fusion: TCGANCOR2 12q24.31 ITGB5 3q21.2 BRCA
Fusion: TCGANCOR2 12q24.31 PGC 6p21.1 LUAD
Fusion: TCGANCOR2 12q24.31 SCARB1 12q24.31 BRCA LAML LUAD
Fusion: TCGANCOR2 12q24.31 TMEM132D 12q24.33 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCOR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCOR2
dbVarNCOR2
ClinVarNCOR2
1000_GenomesNCOR2 
Exome Variant ServerNCOR2
ExAC (Exome Aggregation Consortium)NCOR2 (select the gene name)
Genetic variants : HAPMAP9612
Genomic Variants (DGV)NCOR2 [DGVbeta]
DECIPHERNCOR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCOR2 
Mutations
ICGC Data PortalNCOR2 
TCGA Data PortalNCOR2 
Broad Tumor PortalNCOR2
OASIS PortalNCOR2 [ Somatic mutations - Copy number]
Cancer Gene: CensusNCOR2 
Somatic Mutations in Cancer : COSMICNCOR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCOR2
intOGen PortalNCOR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCOR2
DgiDB (Drug Gene Interaction Database)NCOR2
DoCM (Curated mutations)NCOR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCOR2 (select a term)
intoGenNCOR2
Cancer3DNCOR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600848   
Orphanet
MedgenNCOR2
Genetic Testing Registry NCOR2
NextProtQ9Y618 [Medical]
TSGene9612
GENETestsNCOR2
Huge Navigator NCOR2 [HugePedia]
snp3D : Map Gene to Disease9612
BioCentury BCIQNCOR2
ClinGenNCOR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9612
Chemical/Pharm GKB GenePA31478
Clinical trialNCOR2
Miscellaneous
canSAR (ICR)NCOR2 (select the gene name)
Probes
Litterature
PubMed252 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCOR2
EVEXNCOR2
GoPubMedNCOR2
iHOPNCOR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:28:11 CEST 2017

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