Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NCR3LG1 (natural killer cell cytotoxicity receptor 3 ligand 1)

Identity

Alias_symbol (synonym)DKFZp686O24166
B7-H6
Other aliasB7H6
HGNC (Hugo) NCR3LG1
LocusID (NCBI) 374383
Atlas_Id 52208
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 17351762 and ends at 17377321 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCR3LG1   42400
Cards
Entrez_Gene (NCBI)NCR3LG1  374383  natural killer cell cytotoxicity receptor 3 ligand 1
AliasesB7-H6; B7H6; DKFZp686O24166
GeneCards (Weizmann)NCR3LG1
Ensembl hg19 (Hinxton)ENSG00000188211 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188211 [Gene_View]  ENSG00000188211 [Sequence]  chr11:17351762-17377321 [Contig_View]  NCR3LG1 [Vega]
ICGC DataPortalENSG00000188211
TCGA cBioPortalNCR3LG1
AceView (NCBI)NCR3LG1
Genatlas (Paris)NCR3LG1
WikiGenes374383
SOURCE (Princeton)NCR3LG1
Genetics Home Reference (NIH)NCR3LG1
Genomic and cartography
GoldenPath hg38 (UCSC)NCR3LG1  -     chr11:17351762-17377321 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCR3LG1  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblNCR3LG1 - 11p15.1 [CytoView hg19]  NCR3LG1 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBINCR3LG1 [Mapview hg19]  NCR3LG1 [Mapview hg38]
OMIM613714   
Gene and transcription
Genbank (Entrez)BC136797 BC136800 BX537685 CR749521
RefSeq transcript (Entrez)NM_001009913 NM_001202439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCR3LG1
Cluster EST : UnigeneHs.146274 [ NCBI ]
CGAP (NCI)Hs.146274
Alternative Splicing GalleryENSG00000188211
Gene ExpressionNCR3LG1 [ NCBI-GEO ]   NCR3LG1 [ EBI - ARRAY_EXPRESS ]   NCR3LG1 [ SEEK ]   NCR3LG1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCR3LG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374383
GTEX Portal (Tissue expression)NCR3LG1
Human Protein AtlasENSG00000188211-NCR3LG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D85
Splice isoforms : SwissVarQ68D85
PhosPhoSitePlusQ68D85
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)G_retro_matrix    Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    Ig_sub    Retrovr_matrix   
Domain families : Pfam (Sanger)C1-set (PF07654)    Gag_MA (PF01140)   
Domain families : Pfam (NCBI)pfam07654    pfam01140   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
Conserved Domain (NCBI)NCR3LG1
DMDM Disease mutations374383
Blocks (Seattle)NCR3LG1
PDB (SRS)3PV6    3PV7    4ZSO   
PDB (PDBSum)3PV6    3PV7    4ZSO   
PDB (IMB)3PV6    3PV7    4ZSO   
PDB (RSDB)3PV6    3PV7    4ZSO   
Structural Biology KnowledgeBase3PV6    3PV7    4ZSO   
SCOP (Structural Classification of Proteins)3PV6    3PV7    4ZSO   
CATH (Classification of proteins structures)3PV6    3PV7    4ZSO   
SuperfamilyQ68D85
Human Protein Atlas [tissue]ENSG00000188211-NCR3LG1 [tissue]
Peptide AtlasQ68D85
HPRD16820
IPIIPI00398918   
Protein Interaction databases
DIP (DOE-UCLA)Q68D85
IntAct (EBI)Q68D85
FunCoupENSG00000188211
BioGRIDNCR3LG1
STRING (EMBL)NCR3LG1
ZODIACNCR3LG1
Ontologies - Pathways
QuickGOQ68D85
Ontology : AmiGOstructural molecule activity  protein binding  plasma membrane  integral component of membrane  viral capsid  regulation of immune response  
Ontology : EGO-EBIstructural molecule activity  protein binding  plasma membrane  integral component of membrane  viral capsid  regulation of immune response  
NDEx NetworkNCR3LG1
Atlas of Cancer Signalling NetworkNCR3LG1
Wikipedia pathwaysNCR3LG1
Orthology - Evolution
OrthoDB374383
GeneTree (enSembl)ENSG00000188211
Phylogenetic Trees/Animal Genes : TreeFamNCR3LG1
HOVERGENQ68D85
HOGENOMQ68D85
Homologs : HomoloGeneNCR3LG1
Homology/Alignments : Family Browser (UCSC)NCR3LG1
Gene fusions - Rearrangements
Fusion : QuiverNCR3LG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCR3LG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCR3LG1
dbVarNCR3LG1
ClinVarNCR3LG1
1000_GenomesNCR3LG1 
Exome Variant ServerNCR3LG1
ExAC (Exome Aggregation Consortium)ENSG00000188211
GNOMAD BrowserENSG00000188211
Genetic variants : HAPMAP374383
Genomic Variants (DGV)NCR3LG1 [DGVbeta]
DECIPHERNCR3LG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCR3LG1 
Mutations
ICGC Data PortalNCR3LG1 
TCGA Data PortalNCR3LG1 
Broad Tumor PortalNCR3LG1
OASIS PortalNCR3LG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCR3LG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNCR3LG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCR3LG1
DgiDB (Drug Gene Interaction Database)NCR3LG1
DoCM (Curated mutations)NCR3LG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCR3LG1 (select a term)
intoGenNCR3LG1
Cancer3DNCR3LG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613714   
Orphanet
DisGeNETNCR3LG1
MedgenNCR3LG1
Genetic Testing Registry NCR3LG1
NextProtQ68D85 [Medical]
TSGene374383
GENETestsNCR3LG1
Target ValidationNCR3LG1
Huge Navigator NCR3LG1 [HugePedia]
snp3D : Map Gene to Disease374383
BioCentury BCIQNCR3LG1
ClinGenNCR3LG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374383
Chemical/Pharm GKB GenePA166049084
Clinical trialNCR3LG1
Miscellaneous
canSAR (ICR)NCR3LG1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNCR3LG1
EVEXNCR3LG1
GoPubMedNCR3LG1
iHOPNCR3LG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:39:41 CEST 2018
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