Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NCR3LG1 (natural killer cell cytotoxicity receptor 3 ligand 1)

Identity

Alias (NCBI)B7-H6
B7H6
DKFZp686O24166
HGNC (Hugo) NCR3LG1
HGNC Alias symbDKFZp686O24166
B7-H6
HGNC Alias nameB7 homolog 6
LocusID (NCBI) 374383
Atlas_Id 52208
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 17351800 and ends at 17377324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCR3LG1   42400
Cards
Entrez_Gene (NCBI)NCR3LG1    natural killer cell cytotoxicity receptor 3 ligand 1
AliasesB7-H6; B7H6; DKFZp686O24166
GeneCards (Weizmann)NCR3LG1
Ensembl hg19 (Hinxton)ENSG00000188211 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188211 [Gene_View]  ENSG00000188211 [Sequence]  chr11:17351800-17377324 [Contig_View]  NCR3LG1 [Vega]
ICGC DataPortalENSG00000188211
TCGA cBioPortalNCR3LG1
AceView (NCBI)NCR3LG1
Genatlas (Paris)NCR3LG1
SOURCE (Princeton)NCR3LG1
Genetics Home Reference (NIH)NCR3LG1
Genomic and cartography
GoldenPath hg38 (UCSC)NCR3LG1  -     chr11:17351800-17377324 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCR3LG1  -     11p15.1   [Description]    (hg19-Feb_2009)
GoldenPathNCR3LG1 - 11p15.1 [CytoView hg19]  NCR3LG1 - 11p15.1 [CytoView hg38]
ImmunoBaseENSG00000188211
genome Data Viewer NCBINCR3LG1 [Mapview hg19]  
OMIM613714   
Gene and transcription
Genbank (Entrez)BC136797 BC136800 BX537685 CR749521
RefSeq transcript (Entrez)NM_001009913 NM_001202439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NCR3LG1
Alternative Splicing GalleryENSG00000188211
Gene ExpressionNCR3LG1 [ NCBI-GEO ]   NCR3LG1 [ EBI - ARRAY_EXPRESS ]   NCR3LG1 [ SEEK ]   NCR3LG1 [ MEM ]
Gene Expression Viewer (FireBrowse)NCR3LG1 [ Firebrowse - Broad ]
GenevisibleExpression of NCR3LG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374383
GTEX Portal (Tissue expression)NCR3LG1
Human Protein AtlasENSG00000188211-NCR3LG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D85
Splice isoforms : SwissVarQ68D85
PhosPhoSitePlusQ68D85
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)G_retro_matrix    G_retro_matrix_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    Ig_sub    Retrovr_matrix   
Domain families : Pfam (Sanger)C1-set (PF07654)    Gag_MA (PF01140)   
Domain families : Pfam (NCBI)pfam07654    pfam01140   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
Conserved Domain (NCBI)NCR3LG1
Blocks (Seattle)NCR3LG1
PDB (RSDB)3PV6    3PV7    4ZSO   
PDB Europe3PV6    3PV7    4ZSO   
PDB (PDBSum)3PV6    3PV7    4ZSO   
PDB (IMB)3PV6    3PV7    4ZSO   
Structural Biology KnowledgeBase3PV6    3PV7    4ZSO   
SCOP (Structural Classification of Proteins)3PV6    3PV7    4ZSO   
CATH (Classification of proteins structures)3PV6    3PV7    4ZSO   
SuperfamilyQ68D85
Human Protein Atlas [tissue]ENSG00000188211-NCR3LG1 [tissue]
Peptide AtlasQ68D85
HPRD16820
IPIIPI00398918   
Protein Interaction databases
DIP (DOE-UCLA)Q68D85
IntAct (EBI)Q68D85
BioGRIDNCR3LG1
STRING (EMBL)NCR3LG1
ZODIACNCR3LG1
Ontologies - Pathways
QuickGOQ68D85
Ontology : AmiGOprotein binding  plasma membrane  integral component of membrane  regulation of immune response  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of membrane  regulation of immune response  
NDEx NetworkNCR3LG1
Atlas of Cancer Signalling NetworkNCR3LG1
Wikipedia pathwaysNCR3LG1
Orthology - Evolution
OrthoDB374383
GeneTree (enSembl)ENSG00000188211
Phylogenetic Trees/Animal Genes : TreeFamNCR3LG1
HOGENOMQ68D85
Homologs : HomoloGeneNCR3LG1
Homology/Alignments : Family Browser (UCSC)NCR3LG1
Gene fusions - Rearrangements
Fusion : QuiverNCR3LG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCR3LG1 [hg38]
dbVarNCR3LG1
ClinVarNCR3LG1
MonarchNCR3LG1
1000_GenomesNCR3LG1 
Exome Variant ServerNCR3LG1
GNOMAD BrowserENSG00000188211
Varsome BrowserNCR3LG1
Genomic Variants (DGV)NCR3LG1 [DGVbeta]
DECIPHERNCR3LG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCR3LG1 
Mutations
ICGC Data PortalNCR3LG1 
TCGA Data PortalNCR3LG1 
Broad Tumor PortalNCR3LG1
OASIS PortalNCR3LG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCR3LG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNCR3LG1
Mutations and Diseases : HGMDNCR3LG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NCR3LG1
DgiDB (Drug Gene Interaction Database)NCR3LG1
DoCM (Curated mutations)NCR3LG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NCR3LG1 (select a term)
intoGenNCR3LG1
Cancer3DNCR3LG1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613714   
Orphanet
DisGeNETNCR3LG1
MedgenNCR3LG1
Genetic Testing Registry NCR3LG1
NextProtQ68D85 [Medical]
GENETestsNCR3LG1
Target ValidationNCR3LG1
Huge Navigator NCR3LG1 [HugePedia]
ClinGenNCR3LG1
Clinical trials, drugs, therapy
MyCancerGenomeNCR3LG1
Protein Interactions : CTD
Pharm GKB GenePA166049084
PharosQ68D85
Clinical trialNCR3LG1
Miscellaneous
canSAR (ICR)NCR3LG1 (select the gene name)
HarmonizomeNCR3LG1
DataMed IndexNCR3LG1
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNCR3LG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:28:26 CET 2021
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