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NDEL1 (nudE neurodevelopment protein 1 like 1)

Identity

Alias_namesnudE nuclear distribution gene E homolog (A. nidulans)-like 1
nudE nuclear distribution E homolog (A. nidulans)-like 1
Alias_symbol (synonym)NUDEL
MITAP1
NDE1L1
NDE2
Other aliasEOPA
HGNC (Hugo) NDEL1
LocusID (NCBI) 81565
Atlas_Id 56336
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8339170 and ends at 8371495 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NDEL1 (17p13.1) / NDEL1 (17p13.1)NDEL1 (17p13.1) / WSCD1 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDEL1   17620
Cards
Entrez_Gene (NCBI)NDEL1  81565  nudE neurodevelopment protein 1 like 1
AliasesEOPA; MITAP1; NDE1L1; NDE2; 
NUDEL
GeneCards (Weizmann)NDEL1
Ensembl hg19 (Hinxton)ENSG00000166579 [Gene_View]  chr17:8339170-8371495 [Contig_View]  NDEL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166579 [Gene_View]  chr17:8339170-8371495 [Contig_View]  NDEL1 [Vega]
ICGC DataPortalENSG00000166579
TCGA cBioPortalNDEL1
AceView (NCBI)NDEL1
Genatlas (Paris)NDEL1
WikiGenes81565
SOURCE (Princeton)NDEL1
Genetics Home Reference (NIH)NDEL1
Genomic and cartography
GoldenPath hg19 (UCSC)NDEL1  -     chr17:8339170-8371495 +  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NDEL1  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblNDEL1 - 17p13.1 [CytoView hg19]  NDEL1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBINDEL1 [Mapview hg19]  NDEL1 [Mapview hg38]
OMIM607538   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001025579 NM_001330129 NM_030808
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDEL1
Cluster EST : UnigeneHs.740680 [ NCBI ]
CGAP (NCI)Hs.740680
Alternative Splicing GalleryENSG00000166579
Gene ExpressionNDEL1 [ NCBI-GEO ]   NDEL1 [ EBI - ARRAY_EXPRESS ]   NDEL1 [ SEEK ]   NDEL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NDEL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81565
GTEX Portal (Tissue expression)NDEL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZM8
Splice isoforms : SwissVarQ9GZM8
PhosPhoSitePlusQ9GZM8
Domains : Interpro (EBI)NDEL1    NUDE    NUDE_dom   
Domain families : Pfam (Sanger)NUDE_C (PF04880)   
Domain families : Pfam (NCBI)pfam04880   
Conserved Domain (NCBI)NDEL1
DMDM Disease mutations81565
Blocks (Seattle)NDEL1
PDB (SRS)2V66   
PDB (PDBSum)2V66   
PDB (IMB)2V66   
PDB (RSDB)2V66   
Structural Biology KnowledgeBase2V66   
SCOP (Structural Classification of Proteins)2V66   
CATH (Classification of proteins structures)2V66   
SuperfamilyQ9GZM8
Human Protein AtlasENSG00000166579
Peptide AtlasQ9GZM8
HPRD06340
IPIIPI00940808   IPI00384038   IPI00551002   IPI00006602   IPI00980169   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZM8
IntAct (EBI)Q9GZM8
FunCoupENSG00000166579
BioGRIDNDEL1
STRING (EMBL)NDEL1
ZODIACNDEL1
Ontologies - Pathways
QuickGOQ9GZM8
Ontology : AmiGOestablishment of mitotic spindle orientation  kinetochore  condensed chromosome kinetochore  neuron migration  inner cell mass cell proliferation  protein binding  nuclear envelope  centrosome  spindle  cytosol  kinesin complex  microtubule  proteolysis  microtubule nucleation  chromosome segregation  sister chromatid cohesion  mitotic centrosome separation  microtubule binding  synaptic vesicle  retrograde axonal transport  regulation of neuron projection development  cell migration  cerebral cortex radially oriented cell migration  central nervous system neuron axonogenesis  cell leading edge  protein complex binding  regulation of intracellular protein transport  alpha-tubulin binding  axon hillock  positive regulation of GTPase activity  positive regulation of axon extension  vesicle transport along microtubule  beta-tubulin binding  positive regulation of axon regeneration  nuclear envelope disassembly  establishment of chromosome localization  centrosome localization  neurofilament cytoskeleton organization  neurofilament cytoskeleton  oligopeptidase activity  activation of GTPase activity  axon cytoplasm  neuron projection extension  regulation of microtubule motor activity  
Ontology : EGO-EBIestablishment of mitotic spindle orientation  kinetochore  condensed chromosome kinetochore  neuron migration  inner cell mass cell proliferation  protein binding  nuclear envelope  centrosome  spindle  cytosol  kinesin complex  microtubule  proteolysis  microtubule nucleation  chromosome segregation  sister chromatid cohesion  mitotic centrosome separation  microtubule binding  synaptic vesicle  retrograde axonal transport  regulation of neuron projection development  cell migration  cerebral cortex radially oriented cell migration  central nervous system neuron axonogenesis  cell leading edge  protein complex binding  regulation of intracellular protein transport  alpha-tubulin binding  axon hillock  positive regulation of GTPase activity  positive regulation of axon extension  vesicle transport along microtubule  beta-tubulin binding  positive regulation of axon regeneration  nuclear envelope disassembly  establishment of chromosome localization  centrosome localization  neurofilament cytoskeleton organization  neurofilament cytoskeleton  oligopeptidase activity  activation of GTPase activity  axon cytoplasm  neuron projection extension  regulation of microtubule motor activity  
Pathways : BIOCARTALissencephaly gene (LIS1) in neuronal migration and development [Genes]   
NDEx NetworkNDEL1
Atlas of Cancer Signalling NetworkNDEL1
Wikipedia pathwaysNDEL1
Orthology - Evolution
OrthoDB81565
GeneTree (enSembl)ENSG00000166579
Phylogenetic Trees/Animal Genes : TreeFamNDEL1
HOVERGENQ9GZM8
HOGENOMQ9GZM8
Homologs : HomoloGeneNDEL1
Homology/Alignments : Family Browser (UCSC)NDEL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDEL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDEL1
dbVarNDEL1
ClinVarNDEL1
1000_GenomesNDEL1 
Exome Variant ServerNDEL1
ExAC (Exome Aggregation Consortium)NDEL1 (select the gene name)
Genetic variants : HAPMAP81565
Genomic Variants (DGV)NDEL1 [DGVbeta]
DECIPHER (Syndromes)17:8339170-8371495  ENSG00000166579
CONAN: Copy Number AnalysisNDEL1 
Mutations
ICGC Data PortalNDEL1 
TCGA Data PortalNDEL1 
Broad Tumor PortalNDEL1
OASIS PortalNDEL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDEL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDEL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDEL1
DgiDB (Drug Gene Interaction Database)NDEL1
DoCM (Curated mutations)NDEL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDEL1 (select a term)
intoGenNDEL1
Cancer3DNDEL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607538   
Orphanet
MedgenNDEL1
Genetic Testing Registry NDEL1
NextProtQ9GZM8 [Medical]
TSGene81565
GENETestsNDEL1
Huge Navigator NDEL1 [HugePedia]
snp3D : Map Gene to Disease81565
BioCentury BCIQNDEL1
ClinGenNDEL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81565
Chemical/Pharm GKB GenePA134887314
Clinical trialNDEL1
Miscellaneous
canSAR (ICR)NDEL1 (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDEL1
EVEXNDEL1
GoPubMedNDEL1
iHOPNDEL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:55 CEST 2017

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