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NDFIP2 (Nedd4 family interacting protein 2)

Identity

Alias_symbol (synonym)KIAA1165
N4wbp5a
Other aliasN4WBP5A
HGNC (Hugo) NDFIP2
LocusID (NCBI) 54602
Atlas_Id 70749
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 79481124 and ends at 79556077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NBEA (13q13.3) / NDFIP2 (13q31.1)NDFIP2 (13q31.1) / MKLN1 (7q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDFIP2   18537
Cards
Entrez_Gene (NCBI)NDFIP2  54602  Nedd4 family interacting protein 2
AliasesN4WBP5A
GeneCards (Weizmann)NDFIP2
Ensembl hg19 (Hinxton)ENSG00000102471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102471 [Gene_View]  chr13:79481124-79556077 [Contig_View]  NDFIP2 [Vega]
ICGC DataPortalENSG00000102471
TCGA cBioPortalNDFIP2
AceView (NCBI)NDFIP2
Genatlas (Paris)NDFIP2
WikiGenes54602
SOURCE (Princeton)NDFIP2
Genetics Home Reference (NIH)NDFIP2
Genomic and cartography
GoldenPath hg38 (UCSC)NDFIP2  -     chr13:79481124-79556077 +  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDFIP2  -     13q31.1   [Description]    (hg19-Feb_2009)
EnsemblNDFIP2 - 13q31.1 [CytoView hg19]  NDFIP2 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBINDFIP2 [Mapview hg19]  NDFIP2 [Mapview hg38]
OMIM610041   
Gene and transcription
Genbank (Entrez)AB032991 AB097019 AB097028 AB097029 AB097030
RefSeq transcript (Entrez)NM_001161407 NM_019080
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDFIP2
Cluster EST : UnigeneHs.525093 [ NCBI ]
CGAP (NCI)Hs.525093
Alternative Splicing GalleryENSG00000102471
Gene ExpressionNDFIP2 [ NCBI-GEO ]   NDFIP2 [ EBI - ARRAY_EXPRESS ]   NDFIP2 [ SEEK ]   NDFIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NDFIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54602
GTEX Portal (Tissue expression)NDFIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV92
Splice isoforms : SwissVarQ9NV92
PhosPhoSitePlusQ9NV92
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NDFIP2
DMDM Disease mutations54602
Blocks (Seattle)NDFIP2
SuperfamilyQ9NV92
Human Protein AtlasENSG00000102471
Peptide AtlasQ9NV92
HPRD17629
IPIIPI00385038   IPI00910797   IPI00946938   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV92
IntAct (EBI)Q9NV92
FunCoupENSG00000102471
BioGRIDNDFIP2
STRING (EMBL)NDFIP2
ZODIACNDFIP2
Ontologies - Pathways
QuickGOQ9NV92
Ontology : AmiGOGolgi membrane  signal transducer activity  protein binding  cytoplasm  mitochondrion  endoplasmic reticulum  Golgi apparatus  signal transduction  negative regulation of gene expression  integral component of membrane  positive regulation of protein ubiquitination  negative regulation of transporter activity  multivesicular body membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  WW domain binding  negative regulation of protein transport  
Ontology : EGO-EBIGolgi membrane  signal transducer activity  protein binding  cytoplasm  mitochondrion  endoplasmic reticulum  Golgi apparatus  signal transduction  negative regulation of gene expression  integral component of membrane  positive regulation of protein ubiquitination  negative regulation of transporter activity  multivesicular body membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  WW domain binding  negative regulation of protein transport  
NDEx NetworkNDFIP2
Atlas of Cancer Signalling NetworkNDFIP2
Wikipedia pathwaysNDFIP2
Orthology - Evolution
OrthoDB54602
GeneTree (enSembl)ENSG00000102471
Phylogenetic Trees/Animal Genes : TreeFamNDFIP2
HOVERGENQ9NV92
HOGENOMQ9NV92
Homologs : HomoloGeneNDFIP2
Homology/Alignments : Family Browser (UCSC)NDFIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDFIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDFIP2
dbVarNDFIP2
ClinVarNDFIP2
1000_GenomesNDFIP2 
Exome Variant ServerNDFIP2
ExAC (Exome Aggregation Consortium)NDFIP2 (select the gene name)
Genetic variants : HAPMAP54602
Genomic Variants (DGV)NDFIP2 [DGVbeta]
DECIPHERNDFIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDFIP2 
Mutations
ICGC Data PortalNDFIP2 
TCGA Data PortalNDFIP2 
Broad Tumor PortalNDFIP2
OASIS PortalNDFIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDFIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDFIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDFIP2
DgiDB (Drug Gene Interaction Database)NDFIP2
DoCM (Curated mutations)NDFIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDFIP2 (select a term)
intoGenNDFIP2
Cancer3DNDFIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610041   
Orphanet
MedgenNDFIP2
Genetic Testing Registry NDFIP2
NextProtQ9NV92 [Medical]
TSGene54602
GENETestsNDFIP2
Target ValidationNDFIP2
Huge Navigator NDFIP2 [HugePedia]
snp3D : Map Gene to Disease54602
BioCentury BCIQNDFIP2
ClinGenNDFIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54602
Chemical/Pharm GKB GenePA134953250
Clinical trialNDFIP2
Miscellaneous
canSAR (ICR)NDFIP2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDFIP2
EVEXNDFIP2
GoPubMedNDFIP2
iHOPNDFIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:50 CEST 2017

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