Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NDNF (neuron-derived neurotrophic factor)

Identity

Alias_namesC4orf31
chromosome 4 open reading frame 31
Alias_symbol (synonym)FLJ23191
Other alias
HGNC (Hugo) NDNF
LocusID (NCBI) 79625
Atlas_Id 70751
Location 4q27  [Link to chromosome band 4q27]
Location_base_pair Starts at 121956782 and ends at 121993673 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDNF   26256
Cards
Entrez_Gene (NCBI)NDNF  79625  neuron-derived neurotrophic factor
AliasesC4orf31
GeneCards (Weizmann)NDNF
Ensembl hg19 (Hinxton)ENSG00000173376 [Gene_View]  chr4:121956782-121993673 [Contig_View]  NDNF [Vega]
Ensembl hg38 (Hinxton)ENSG00000173376 [Gene_View]  chr4:121956782-121993673 [Contig_View]  NDNF [Vega]
ICGC DataPortalENSG00000173376
TCGA cBioPortalNDNF
AceView (NCBI)NDNF
Genatlas (Paris)NDNF
WikiGenes79625
SOURCE (Princeton)NDNF
Genetics Home Reference (NIH)NDNF
Genomic and cartography
GoldenPath hg19 (UCSC)NDNF  -     chr4:121956782-121993673 -  4q27   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NDNF  -     4q27   [Description]    (hg38-Dec_2013)
EnsemblNDNF - 4q27 [CytoView hg19]  NDNF - 4q27 [CytoView hg38]
Mapping of homologs : NCBINDNF [Mapview hg19]  NDNF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026844 AK289615 AY358821 BC019351 BX359842
RefSeq transcript (Entrez)NM_024574
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)NDNF
Cluster EST : UnigeneHs.709520 [ NCBI ]
CGAP (NCI)Hs.709520
Alternative Splicing GalleryENSG00000173376
Gene ExpressionNDNF [ NCBI-GEO ]   NDNF [ EBI - ARRAY_EXPRESS ]   NDNF [ SEEK ]   NDNF [ MEM ]
Gene Expression Viewer (FireBrowse)NDNF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79625
GTEX Portal (Tissue expression)NDNF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB73
Splice isoforms : SwissVarQ8TB73
PhosPhoSitePlusQ8TB73
Domains : Interpro (EBI)DUF2369    FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)DUF2369 (PF10179)   
Domain families : Pfam (NCBI)pfam10179   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)NDNF
DMDM Disease mutations79625
Blocks (Seattle)NDNF
SuperfamilyQ8TB73
Human Protein AtlasENSG00000173376
Peptide AtlasQ8TB73
HPRD08019
IPIIPI00152148   IPI00966005   IPI00964048   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB73
IntAct (EBI)Q8TB73
FunCoupENSG00000173376
BioGRIDNDNF
STRING (EMBL)NDNF
ZODIACNDNF
Ontologies - Pathways
QuickGOQ8TB73
Ontology : AmiGOneuron migration  glycosaminoglycan binding  extracellular region  heparin binding  positive regulation of cell-substrate adhesion  positive regulation of neuron projection development  cell growth  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan  extracellular matrix organization  extracellular matrix  negative regulation of neuron apoptotic process  
Ontology : EGO-EBIneuron migration  glycosaminoglycan binding  extracellular region  heparin binding  positive regulation of cell-substrate adhesion  positive regulation of neuron projection development  cell growth  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan  extracellular matrix organization  extracellular matrix  negative regulation of neuron apoptotic process  
NDEx NetworkNDNF
Atlas of Cancer Signalling NetworkNDNF
Wikipedia pathwaysNDNF
Orthology - Evolution
OrthoDB79625
GeneTree (enSembl)ENSG00000173376
Phylogenetic Trees/Animal Genes : TreeFamNDNF
HOVERGENQ8TB73
HOGENOMQ8TB73
Homologs : HomoloGeneNDNF
Homology/Alignments : Family Browser (UCSC)NDNF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDNF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDNF
dbVarNDNF
ClinVarNDNF
1000_GenomesNDNF 
Exome Variant ServerNDNF
ExAC (Exome Aggregation Consortium)NDNF (select the gene name)
Genetic variants : HAPMAP79625
Genomic Variants (DGV)NDNF [DGVbeta]
DECIPHER (Syndromes)4:121956782-121993673  ENSG00000173376
CONAN: Copy Number AnalysisNDNF 
Mutations
ICGC Data PortalNDNF 
TCGA Data PortalNDNF 
Broad Tumor PortalNDNF
OASIS PortalNDNF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDNF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDNF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDNF
DgiDB (Drug Gene Interaction Database)NDNF
DoCM (Curated mutations)NDNF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDNF (select a term)
intoGenNDNF
Cancer3DNDNF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNDNF
Genetic Testing Registry NDNF
NextProtQ8TB73 [Medical]
TSGene79625
GENETestsNDNF
Huge Navigator NDNF [HugePedia]
snp3D : Map Gene to Disease79625
BioCentury BCIQNDNF
ClinGenNDNF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79625
Chemical/Pharm GKB GenePA147358639
Clinical trialNDNF
Miscellaneous
canSAR (ICR)NDNF (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDNF
EVEXNDNF
GoPubMedNDNF
iHOPNDNF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:34:39 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.