Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NDOR1 (NADPH dependent diflavin oxidoreductase 1)

Identity

Alias_symbol (synonym)NR1
bA350O14.9
Other alias
HGNC (Hugo) NDOR1
LocusID (NCBI) 27158
Atlas_Id 70752
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137205667 and ends at 137219361 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRKACA (19p13.12) / NDOR1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDOR1   29838
Cards
Entrez_Gene (NCBI)NDOR1  27158  NADPH dependent diflavin oxidoreductase 1
AliasesNR1; bA350O14.9
GeneCards (Weizmann)NDOR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:137205667-137219361 [Contig_View]  NDOR1 [Vega]
TCGA cBioPortalNDOR1
AceView (NCBI)NDOR1
Genatlas (Paris)NDOR1
WikiGenes27158
SOURCE (Princeton)NDOR1
Genetics Home Reference (NIH)NDOR1
Genomic and cartography
GoldenPath hg38 (UCSC)NDOR1  -     chr9:137205667-137219361 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDOR1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblNDOR1 - 9q34.3 [CytoView hg19]  NDOR1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBINDOR1 [Mapview hg19]  NDOR1 [Mapview hg38]
OMIM606073   
Gene and transcription
Genbank (Entrez)AF199509 AK026089 AK074403 AK225995 AK290026
RefSeq transcript (Entrez)NM_001144026 NM_001144027 NM_001144028 NM_014434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDOR1
Cluster EST : UnigeneHs.512564 [ NCBI ]
CGAP (NCI)Hs.512564
Gene ExpressionNDOR1 [ NCBI-GEO ]   NDOR1 [ EBI - ARRAY_EXPRESS ]   NDOR1 [ SEEK ]   NDOR1 [ MEM ] /TR>
Gene Expression Viewer (FireBrowse)NDOR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27158
GTEX Portal (Tissue expression)NDOR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHB4
Splice isoforms : SwissVarQ9UHB4
PhosPhoSitePlusQ9UHB4
Domaine pattern : Prosite (Expaxy)FAD_FR (PS51384)    FLAVODOXIN_LIKE (PS50902)   
Domains : Interpro (EBI)FAD-binding_1    Fd_Rdtase_FAD-bd    Flavdoxin-like    Flavodoxin/NO_synth    Flavoprot_Pyr_Nucl_cyt_Rdtase    Flavoprotein-like_dom    NADPH_Cyt_P450_Rdtase_dom3    NDOR1    OxRdtase_FAD/NAD-bd    Riboflavin_synthase-like_b-brl   
Domain families : Pfam (Sanger)FAD_binding_1 (PF00667)    Flavodoxin_1 (PF00258)    NAD_binding_1 (PF00175)   
Domain families : Pfam (NCBI)pfam00667    pfam00258    pfam00175   
Conserved Domain (NCBI)NDOR1
DMDM Disease mutations27158
Blocks (Seattle)NDOR1
PDB (SRS)4H2D   
PDB (PDBSum)4H2D   
PDB (IMB)4H2D   
PDB (RSDB)4H2D   
Structural Biology KnowledgeBase4H2D   
SCOP (Structural Classification of Proteins)4H2D   
CATH (Classification of proteins structures)4H2D   
SuperfamilyQ9UHB4
Peptide AtlasQ9UHB4
HPRD10444
IPIIPI00791177   IPI00748284   IPI00921369   IPI00921421   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHB4
IntAct (EBI)Q9UHB4
BioGRIDNDOR1
STRING (EMBL)NDOR1
ZODIACNDOR1
Ontologies - Pathways
QuickGOQ9UHB4
Ontology : AmiGONADPH-hemoprotein reductase activity  protein binding  nucleus  cytoplasm  cytosol  cell death  FMN binding  oxidoreductase activity  cellular response to menadione  intermediate filament cytoskeleton  perinuclear region of cytoplasm  flavin adenine dinucleotide binding  NADP binding  oxidation-reduction process  
Ontology : EGO-EBINADPH-hemoprotein reductase activity  protein binding  nucleus  cytoplasm  cytosol  cell death  FMN binding  oxidoreductase activity  cellular response to menadione  intermediate filament cytoskeleton  perinuclear region of cytoplasm  flavin adenine dinucleotide binding  NADP binding  oxidation-reduction process  
NDEx NetworkNDOR1
Atlas of Cancer Signalling NetworkNDOR1
Wikipedia pathwaysNDOR1
Orthology - Evolution
OrthoDB27158
Phylogenetic Trees/Animal Genes : TreeFamNDOR1
HOVERGENQ9UHB4
HOGENOMQ9UHB4
Homologs : HomoloGeneNDOR1
Homology/Alignments : Family Browser (UCSC)NDOR1
Gene fusions - Rearrangements
Tumor Fusion PortalNDOR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDOR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDOR1
dbVarNDOR1
ClinVarNDOR1
1000_GenomesNDOR1 
Exome Variant ServerNDOR1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP27158
Genomic Variants (DGV)NDOR1 [DGVbeta]
DECIPHERNDOR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDOR1 
Mutations
ICGC Data PortalNDOR1 
TCGA Data PortalNDOR1 
Broad Tumor PortalNDOR1
OASIS PortalNDOR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDOR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNDOR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NDOR1
DgiDB (Drug Gene Interaction Database)NDOR1
DoCM (Curated mutations)NDOR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDOR1 (select a term)
intoGenNDOR1
Cancer3DNDOR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606073   
Orphanet
DisGeNETNDOR1
MedgenNDOR1
Genetic Testing Registry NDOR1
NextProtQ9UHB4 [Medical]
TSGene27158
GENETestsNDOR1
Target ValidationNDOR1
Huge Navigator NDOR1 [HugePedia]
snp3D : Map Gene to Disease27158
BioCentury BCIQNDOR1
ClinGenNDOR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27158
Chemical/Pharm GKB GenePA134885020
Clinical trialNDOR1
Miscellaneous
canSAR (ICR)NDOR1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDOR1
EVEXNDOR1
GoPubMedNDOR1
iHOPNDOR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:21 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.